2Y3R
Structure of the tirandamycin-bound FAD-dependent tirandamycin oxidase TamL in P21 space group
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF08031 | e2y3rA2 | A: a+b two layers | X: Alpha-beta plaits | H: FAD-linked oxidases, C-terminal domain (From Topology) | T: FAD-linked oxidases, C-terminal domain | F: PF08031 | ECOD (1.6) |
A | PF01565 | e2y3rA1 | A: a+b complex topology | X: FAD-binding domain-like | H: FAD-binding domain (From Topology) | T: FAD-binding domain | F: PF01565 | ECOD (1.6) |
B | PF08031 | e2y3rB1 | A: a+b two layers | X: Alpha-beta plaits | H: FAD-linked oxidases, C-terminal domain (From Topology) | T: FAD-linked oxidases, C-terminal domain | F: PF08031 | ECOD (1.6) |
B | PF01565 | e2y3rB2 | A: a+b complex topology | X: FAD-binding domain-like | H: FAD-binding domain (From Topology) | T: FAD-binding domain | F: PF01565 | ECOD (1.6) |
C | PF08031 | e2y3rC2 | A: a+b two layers | X: Alpha-beta plaits | H: FAD-linked oxidases, C-terminal domain (From Topology) | T: FAD-linked oxidases, C-terminal domain | F: PF08031 | ECOD (1.6) |
C | PF01565 | e2y3rC1 | A: a+b complex topology | X: FAD-binding domain-like | H: FAD-binding domain (From Topology) | T: FAD-binding domain | F: PF01565 | ECOD (1.6) |
D | PF08031 | e2y3rD2 | A: a+b two layers | X: Alpha-beta plaits | H: FAD-linked oxidases, C-terminal domain (From Topology) | T: FAD-linked oxidases, C-terminal domain | F: PF08031 | ECOD (1.6) |
D | PF01565 | e2y3rD1 | A: a+b complex topology | X: FAD-binding domain-like | H: FAD-binding domain (From Topology) | T: FAD-binding domain | F: PF01565 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.465.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (4.3.0) |
A | 3.40.462.20 | Alpha Beta | 3-Layer(aba) Sandwich | Vanillyl-alcohol Oxidase | Chain A, domain 3 | CATH (4.3.0) |
B | 3.30.465.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (4.3.0) |
B | 3.40.462.20 | Alpha Beta | 3-Layer(aba) Sandwich | Vanillyl-alcohol Oxidase | Chain A, domain 3 | CATH (4.3.0) |
C | 3.30.465.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (4.3.0) |
C | 3.40.462.20 | Alpha Beta | 3-Layer(aba) Sandwich | Vanillyl-alcohol Oxidase | Chain A, domain 3 | CATH (4.3.0) |
D | 3.30.465.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (4.3.0) |
D | 3.40.462.20 | Alpha Beta | 3-Layer(aba) Sandwich | Vanillyl-alcohol Oxidase | Chain A, domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08031 | Berberine and berberine like (BBE) | Berberine and berberine like | This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberin ... | Domain | |
PF01565 | FAD binding domain (FAD_binding_4) | FAD binding domain | This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, call ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
TAML | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006093 | Oxygen oxidoreductase covalent FAD-binding site | Binding Site | |
IPR050416 | FAD-linked Oxidoreductases in Biosynthetic Pathways | Family | |
IPR012951 | Berberine/berberine-like | Domain | |
IPR036318 | FAD-binding, type PCMH-like superfamily | Homologous Superfamily | |
IPR016169 | FAD-binding, type PCMH, subdomain 2 | Homologous Superfamily | |
IPR006094 | FAD linked oxidase, N-terminal | Domain | |
IPR016166 | FAD-binding domain, PCMH-type | Domain |