Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8042950 3002019 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8042951 3002019 SCOP2B (2022-06-29)
K [auth X]SCOP2B SuperfamilyRecA-like P-loop NTPases 8042950 3002019 SCOP2B (2022-06-29)
K [auth X]SCOP2B SuperfamilyRecA-like P-loop NTPases 8042951 3002019 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyMago nashi protein 8042952 3000634 SCOP2B (2022-06-29)
L [auth Y]SCOP2B SuperfamilyMago nashi protein 8042952 3000634 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyRNA-binding domain, RBD 8042953 3000110 SCOP2B (2022-06-29)
M [auth Z]SCOP2B SuperfamilyRNA-binding domain, RBD 8042953 3000110 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADEADe2xb2A2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DEADECOD (1.6)
AHelicase_C_1e2xb2A1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Helicase_C_1ECOD (1.6)
K [auth X]DEADe2xb2X2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DEADECOD (1.6)
K [auth X]Helicase_C_1e2xb2X1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Helicase_C_1ECOD (1.6)
B [auth C]Mago_nashie2xb2C1 A: a+b two layersX: Mago nashi protein (From Topology)H: Mago nashi protein (From Topology)T: Mago nashi proteinF: Mago_nashiECOD (1.6)
L [auth Y]Mago_nashie2xb2Y1 A: a+b two layersX: Mago nashi protein (From Topology)H: Mago nashi protein (From Topology)T: Mago nashi proteinF: Mago_nashiECOD (1.6)
C [auth D]RRM_1_6e2xb2D1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)
M [auth Z]RRM_1_6e2xb2Z1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
K [auth X]
PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
A,
K [auth X]
PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.Domain
B [auth C],
L [auth Y]
PF02792Mago nashi protein (Mago_nashi)Mago nashi protein- Family
C [auth D],
M [auth Z]
PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
K [auth X]
EUKARYOTIC INITIATION FACTOR 4A-III
B [auth C],
L [auth Y]
PROTEIN MAGO NASHI HOMOLOG
C [auth D],
M [auth Z]
RNA-BINDING PROTEIN 8A
D [auth E],
G [auth R]
RNA POLY-U-RIBONUCLEOTIDE---
E [auth F]PUTATIVE REGULATOR OF NONSENSE TRANSCRIPTS 3B
F [auth G],
J [auth U]
REGULATOR OF NONSENSE TRANSCRIPTS 3B
H [auth S],
I [auth T]
PROTEIN CASC3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
K [auth X]
IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
A,
K [auth X]
IPR014014RNA helicase, DEAD-box type, Q motifDomain
A,
K [auth X]
IPR011545DEAD/DEAH box helicase domainDomain
A,
K [auth X]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A,
K [auth X]
IPR001650Helicase, C-terminal domain-likeDomain
A,
K [auth X]
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
B [auth C],
L [auth Y]
IPR004023Mago nashi proteinFamily
B [auth C],
L [auth Y]
IPR036605Mago nashi superfamilyHomologous Superfamily
C [auth D],
M [auth Z]
IPR033744RBM8, RNA recognition motifDomain
C [auth D],
M [auth Z]
IPR000504RNA recognition motif domainDomain
C [auth D],
M [auth Z]
IPR008111RNA-binding motif protein 8Family
C [auth D],
M [auth Z]
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
C [auth D],
M [auth Z]
IPR035979RNA-binding domain superfamilyHomologous Superfamily
E [auth F]IPR034979UPF3B, RNA recognition motif-like domainDomain
E [auth F]IPR039722Nonsense-mediated mRNA decay protein 3Family
E [auth F]IPR005120UPF3 domainDomain
E [auth F]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
E [auth F]IPR035979RNA-binding domain superfamilyHomologous Superfamily
F [auth G],
J [auth U]
IPR034979UPF3B, RNA recognition motif-like domainDomain
F [auth G],
J [auth U]
IPR039722Nonsense-mediated mRNA decay protein 3Family
F [auth G],
J [auth U]
IPR005120UPF3 domainDomain
F [auth G],
J [auth U]
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
F [auth G],
J [auth U]
IPR035979RNA-binding domain superfamilyHomologous Superfamily
H [auth S],
I [auth T]
IPR018545Btz domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A,
K [auth X]
PharosP38919
B [auth C],
L [auth Y]
PharosP61326
C [auth D],
M [auth Z]
PharosQ9Y5S9
E [auth F]PharosQ9BZI7
F [auth G],
J [auth U]
PharosQ9BZI7
H [auth S],
I [auth T]
PharosO15234