2X1X | pdb_00002x1x

CRYSTAL STRUCTURE OF VEGF-C IN COMPLEX WITH DOMAINS 2 AND 3 OF VEGFR2 IN A TETRAGONAL CRYSTAL FORM


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth E]d2x1xe_ Small proteins Cystine-knot cytokines Cystine-knot cytokines automated matches automated matches HUMAN (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth E]SCOP2B SuperfamilyCystine-knot cytokines 8070295 3000846 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth E]PDGFe2x1xE1 A: few secondary structure elementsX: Cystine-knot cytokines (From Topology)H: Cystine-knot cytokines (From Topology)T: Cystine-knot cytokinesF: PDGFECOD (1.6)
B [auth R]C1-set_3e2x1xR4 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_3ECOD (1.6)
B [auth R]IG_likee2x1xR3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: IG_likeECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth E]2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokinesCATH (4.3.0)
B [auth R]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth R]KDR (VEGFR-2, FLK1, CD309) 2C-LIKE Homo sapiens (human) KDR*01 C-LIKE-DOMAIN KDR(Pr121-224_d2), C-LIKE-DOMAIN KDR(Pr225-325_d3,326-327) RPI 2C-LIKE IMGT (202514-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth E]PF00341PDGF/VEGF domain (PDGF)PDGF/VEGF domainDomain
B [auth R]PF21339Vascular endothelial growth factor receptor 1-like, Ig-like domain (VEGFR-1-like_Ig-like)Vascular endothelial growth factor receptor 1-like, Ig-like domainThis domain is found in Vascular endothelial growth factor receptor 1 from humans (VEGFR-1) and similar proteins from animals. VEGFR-1 is a tyrosine kinase receptor for the placental growth factor (PlGF) that plays an essential role in the developmen ...Domain
B [auth R]PF00047Immunoglobulin domain (ig)Immunoglobulin domainMembers of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-prote ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth E]VASCULAR ENDOTHELIAL GROWTH FACTOR C
B [auth R]VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth E]IPR029034Cystine-knot cytokineHomologous Superfamily
A [auth E]IPR023581Platelet-derived growth factor, conserved siteConserved Site
A [auth E]IPR000072PDGF/VEGF domainDomain
A [auth E]IPR004153CXCXC repeatRepeat
A [auth E]IPR050507Platelet-derived/Vascular endothelial growth factorFamily
B [auth R]IPR001824Tyrosine-protein kinase, receptor class III, conserved siteConserved Site
B [auth R]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth R]IPR020635Tyrosine-protein kinase, catalytic domainDomain
B [auth R]IPR000719Protein kinase domainDomain
B [auth R]IPR003599Immunoglobulin domain subtypeDomain
B [auth R]IPR013151Immunoglobulin-like beta-sandwich domainDomain
B [auth R]IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth R]IPR007110Immunoglobulin-like domainDomain
B [auth R]IPR017441Protein kinase, ATP binding siteBinding Site
B [auth R]IPR001245Serine-threonine/tyrosine-protein kinase, catalytic domainDomain
B [auth R]IPR041348VEGFR-2, transmembrane domainDomain
B [auth R]IPR008266Tyrosine-protein kinase, active siteActive Site
B [auth R]IPR009136Vascular endothelial growth factor receptor 2 (VEGFR2)Family
B [auth R]IPR055229VEGFR1-3, fifth immunoglobulin-like domainDomain
B [auth R]IPR003598Immunoglobulin subtype 2Domain
B [auth R]IPR013098Immunoglobulin I-setDomain
B [auth R]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
B [auth R]IPR050122Receptor Tyrosine KinaseFamily
B [auth R]IPR055238VEGFR1-3, N-terminal Ig-like domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth E]PharosP49767
B [auth R]PharosP35968