2WQX
InlB321_4R: S199R, D200R, G206R, A227R, C242A mutant of the Listeria monocytogenes InlB internalin domain
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2wqxa2 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | automated matches | automated matches | (Listeria monocytogenes EGD-e ) [TaxId: 169963 ], | SCOPe (2.08) |
A | d2wqxa1 | Alpha and beta proteins (a/b) | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | L domain-like | Internalin LRR domain | automated matches | (Listeria monocytogenes EGD-e ) [TaxId: 169963 ], | SCOPe (2.08) |
B | d2wqxb2 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | automated matches | automated matches | (Listeria monocytogenes EGD-e ) [TaxId: 169963 ], | SCOPe (2.08) |
B | d2wqxb1 | Alpha and beta proteins (a/b) | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | L domain-like | Internalin LRR domain | automated matches | (Listeria monocytogenes EGD-e ) [TaxId: 169963 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | L domain-like | 8036334 | 3001010 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | E set domains | 8055069 | 3000070 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | E set domains | 8055069 | 3000070 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | L domain-like | 8036334 | 3001010 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | LRR_adjacent | e2wqxA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LRR_adjacent | ECOD (1.6) |
A | LRR_9 | e2wqxA2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_9 | ECOD (1.6) |
A | Internalin_N | e2wqxA3 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: Internalin_N | ECOD (1.6) |
B | LRR_adjacent | e2wqxB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LRR_adjacent | ECOD (1.6) |
B | LRR_9 | e2wqxB2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_9 | ECOD (1.6) |
B | Internalin_N | e2wqxB3 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: Internalin_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
A | 2.60.40.1220 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
B | 2.60.40.1220 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12354 | Bacterial adhesion/invasion protein N terminal (Internalin_N) | Bacterial adhesion/invasion protein N terminal | This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00560, Pfam:PF08191, Pfam:PF09479. There are two completely conserved residues (I and F) that may be functionally i ... | Domain | |
PF12799 | Leucine Rich repeats (2 copies) (LRR_4) | Leucine Rich repeats (2 copies) | - | Repeat | |
PF08191 | LRR adjacent (LRR_adjacent) | LRR adjacent | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
INTERNALIN B | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR025875 | Leucine rich repeat 4 | Repeat | |
IPR025987 | GW domain | Domain | |
IPR013378 | Internalin B-like, B-repeat | Repeat | |
IPR001611 | Leucine-rich repeat | Repeat | |
IPR038200 | GW domain superfamily | Homologous Superfamily | |
IPR012569 | Internalin, Ig-like inter-repeat region | Domain | |
IPR024634 | Internalin, N-terminal | Domain | |
IPR042229 | Listeria-Bacteroides repeat domain superfamily | Homologous Superfamily | |
IPR003591 | Leucine-rich repeat, typical subtype | Repeat | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR014755 | Copper resistance protein CopC/internalin, immunoglobulin-like | Homologous Superfamily | |
IPR050836 | SDS22/Internalin LRR-containing | Family |