2WJV
Crystal structure of the complex between human nonsense mediated decay factors UPF1 and UPF2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RING/U-box like | 8053235 | 3000160 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090881 | 3002019 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | RING/U-box like | 8053236 | 3000160 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090880 | 3002019 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | RING/U-box like | 8053235 | 3000160 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | RING/U-box like | 8053236 | 3000160 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090880 | 3002019 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8090881 | 3002019 | SCOP2B (2021-05-27) |
C [auth D] | SCOP2 Family | UPF2 UPF1-binding region-like | 8045223 | 4004361 | SCOP2 (2021-05-27) |
C [auth D] | SCOP2 Superfamily | UPF2 UPF1-binding region-like | 8057069 | 3002386 | SCOP2 (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF18141 | e2wjvA4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF18141 | ECOD (1.6) |
A | PF13086 | e2wjvA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13086 | ECOD (1.6) |
A | PF13087 | e2wjvA5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13087 | ECOD (1.6) |
A | PF09416 | e2wjvA2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF09416 | ECOD (1.6) |
B | PF18141 | e2wjvB4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF18141 | ECOD (1.6) |
B | PF13086 | e2wjvB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13086 | ECOD (1.6) |
B | PF13087 | e2wjvB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13087 | ECOD (1.6) |
B | PF09416 | e2wjvB5 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF09416 | ECOD (1.6) |
C [auth D] | PF04050 | e2wjvD1 | A: extended segments | X: C-terminal region of nonsense mediated decay factor UPF2 (From Topology) | H: C-terminal region of nonsense mediated decay factor UPF2 (From Topology) | T: C-terminal region of nonsense mediated decay factor UPF2 | F: PF04050 | ECOD (1.6) |
D [auth E] | PF04050 | e2wjvE1 | A: extended segments | X: C-terminal region of nonsense mediated decay factor UPF2 (From Topology) | H: C-terminal region of nonsense mediated decay factor UPF2 (From Topology) | T: C-terminal region of nonsense mediated decay factor UPF2 | F: PF04050 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18141 | RNA helicase UPF1, 1B domain (UPF1_1B_dom) | RNA helicase UPF1, 1B domain | UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. Together with UPF2 and UPF3, forms a surveillance complex, in which UPF2 acts as ... | Domain | |
PF13086 | AAA domain (AAA_11) | AAA domain | This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. | Domain | |
PF13087 | AAA domain (AAA_12) | AAA domain | This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. | Domain | |
PF09416 | RNA helicase (UPF2 interacting domain) (UPF1_Zn_bind) | RNA helicase (UPF2 interacting domain) | UPF1 is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediat ... | Domain | |
C [auth D], D [auth E] | PF04050 | Up-frameshift suppressor 2 (Upf2) | Up-frameshift suppressor 2 | - | Repeat |