2W8B
Crystal structure of processed TolB in complex with Pal
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | TolB N-terminal domain-like | 8042388 | 3000482 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | YWTD domain-like | 8042387 | 3000494 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | YWTD domain-like | 8042387 | 3000494 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TolB N-terminal domain-like | 8042388 | 3000482 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | YWTD domain-like | 8042387 | 3000494 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | TolB N-terminal domain-like | 8042388 | 3000482 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | TolB N-terminal domain-like | 8042388 | 3000482 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | YWTD domain-like | 8042387 | 3000494 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | OmpA-like | 8042389 | 3001650 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | OmpA-like | 8042389 | 3001650 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | OmpA-like | 8042389 | 3001650 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | OmpA-like | 8042389 | 3001650 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07676 | e2w8bA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF07676 | ECOD (1.6) |
A | PF04052 | e2w8bA2 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: PF04052 | ECOD (1.6) |
B | PF07676 | e2w8bB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF07676 | ECOD (1.6) |
B | PF04052 | e2w8bB2 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: PF04052 | ECOD (1.6) |
D | PF07676 | e2w8bD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF07676 | ECOD (1.6) |
D | PF04052 | e2w8bD2 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: PF04052 | ECOD (1.6) |
F | PF07676 | e2w8bF1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF07676 | ECOD (1.6) |
F | PF04052 | e2w8bF2 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: PF04052 | ECOD (1.6) |
C | PF00691 | e2w8bC1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: OmpA-like (From Topology) | T: OmpA-like | F: PF00691 | ECOD (1.6) |
E | PF00691 | e2w8bE1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: OmpA-like (From Topology) | T: OmpA-like | F: PF00691 | ECOD (1.6) |
G | PF00691 | e2w8bG1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: OmpA-like (From Topology) | T: OmpA-like | F: PF00691 | ECOD (1.6) |
H | PF00691 | e2w8bH1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: OmpA-like (From Topology) | T: OmpA-like | F: PF00691 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04052 | TolB amino-terminal domain (TolB_N) | TolB amino-terminal domain | TolB is an essential periplasmic component of the tol-dependent translocation system. This function of this amino terminal domain is uncertain. | Domain | |
PF07676 | WD40-like Beta Propeller Repeat (PD40) | WD40-like Beta Propeller Repeat | - | Repeat | |
PF04052 | TolB amino-terminal domain (TolB_N) | TolB amino-terminal domain | TolB is an essential periplasmic component of the tol-dependent translocation system. This function of this amino terminal domain is uncertain. | Domain | |
PF07676 | WD40-like Beta Propeller Repeat (PD40) | WD40-like Beta Propeller Repeat | - | Repeat | |
PF00691 | OmpA family (OmpA) | OmpA family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011042 | Six-bladed beta-propeller, TolB-like | Homologous Superfamily | |
IPR007195 | TolB, N-terminal | Domain | |
IPR011659 | WD40-like beta propeller | Repeat | |
IPR014167 | Tol-Pal system protein TolB | Family | |
IPR011042 | Six-bladed beta-propeller, TolB-like | Homologous Superfamily | |
IPR007195 | TolB, N-terminal | Domain | |
IPR011659 | WD40-like beta propeller | Repeat | |
IPR014167 | Tol-Pal system protein TolB | Family | |
IPR006664 | Outer membrane protein, bacterial | Domain | |
IPR006665 | OmpA-like domain | Domain | |
IPR039001 | Peptidoglycan-associated lipoprotein | Family | |
IPR006690 | Outer membrane protein, OmpA-like, conserved site | Conserved Site | |
IPR014169 | Peptidoglycan-associated lipoprotein, C-terminal | Domain | |
IPR050330 | Bacterial Outer Membrane Structural/Functional | Family | |
IPR036737 | OmpA-like domain superfamily | Homologous Superfamily |