Annotations: 2VXE

SOLUTION STRUCTURE OF THE LSM DOMAIN OF DROSOPHILA MELANOGASTER TRAL (TRAILER HITCH)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2vxea1	All beta proteins	Sm-like fold	Sm-like ribonucleoproteins	LSM14 N-terminal domain-like	automated matches	FRUIT FLY (Drosophila melanogaster ) [TaxId: 7227 ],	SCOPe (2.08)
A	d2vxea2	Artifacts	Tags	Tags	Tags	N-terminal Tags	FRUIT FLY (Drosophila melanogaster ) [TaxId: 7227 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	LSM14 N-terminal domain-like	8086791	4001796	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Sm-like ribonucleoproteins	8086792	3000419	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ephrin_lbd	e2vxeA1	A: alpha arrays	X: Profilin-like	H: sensor domains	T: sensor domains	F: Ephrin_lbd	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF12701	Scd6-like Sm domain (LSM14)	Scd6-like Sm domain	The Scd6-like Sm domain is found in Scd6p from S. cerevisiae, Rap55 from the newt Pleurodeles walt, and its orthologs from fungi, animals, plants and apicomplexans [1]. The domain is also found in Dcp3p and the human EDC3/FLJ21128 protein where it is ...	The Scd6-like Sm domain is found in Scd6p from S. cerevisiae, Rap55 from the newt Pleurodeles walt, and its orthologs from fungi, animals, plants and apicomplexans [1]. The domain is also found in Dcp3p and the human EDC3/FLJ21128 protein where it is fused to the the Rossmanoid YjeF-N domain [1,2]. In addition both EDC3 and Scd6p are found fused to the FDF domain [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	CG10686-PA	protein binding binding enzyme binding DEAD/H-box RNA helicase binding RNA binding nucleic acid binding	cellular component organization organelle organization cellular process cellular component organization or biogenesis endoplasmic reticulum organization endomembrane system organization developmental process multicellular organismal process regulation of biological process positive regulation of determination of dorsal identity regulation of developmental process biological regulation positive regulation of biological process pattern specification process cellular component organization organelle organization cellular process cellular component organization or biogenesis endoplasmic reticulum organization endomembrane system organization developmental process multicellular organismal process regulation of biological process positive regulation of determination of dorsal identity regulation of developmental process biological regulation positive regulation of biological process pattern specification process regionalization positive regulation of developmental process multicellular organism development dorsal/ventral pattern formation regulation of determination of dorsal identity determination of bilateral symmetry anatomical structure development determination of dorsal/ventral asymmetry positive regulation of multicellular organismal process determination of dorsal identity regulation of multicellular organismal process specification of symmetry microtubule cytoskeleton organization microtubule-based process cytoskeleton organization actin cytoskeleton organization actin filament-based process	intracellular anatomical structure P granule cytoplasmic ribonucleoprotein granule germ plasm intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytosol P-body intracellular anatomical structure P granule cytoplasmic ribonucleoprotein granule germ plasm intracellular membraneless organelle ribonucleoprotein granule intracellular organelle cellular anatomical structure organelle membraneless organelle cytoplasm supramolecular complex cytosol P-body fusome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR025761	FFD box	Domain
A	IPR047575	Sm domain	Domain
A	IPR025762	DFDF domain	Domain
A	IPR010920	LSM domain superfamily	Homologous Superfamily
A	IPR025609	Lsm14-like, N-terminal	Domain
A	IPR025768	TFG box	Domain
A	IPR019050	FDF domain	Domain