2V8M
Carbohydrate-binding of the starch binding domain of Rhizopus oryzae glucoamylase in complex with beta-cyclodextrin and maltoheptaose
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Starch-binding domain-like | 8092808 | 3000816 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Starch-binding domain-like | 8092808 | 3000816 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Starch-binding domain-like | 8092808 | 3000816 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Starch-binding domain-like | 8092808 | 3000816 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | CBM_21 | e2v8mC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: CBM_21 | ECOD (1.6) |
D | CBM_21 | e2v8mD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: CBM_21 | ECOD (1.6) |
A | CBM_21 | e2v8mA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: CBM_21 | ECOD (1.6) |
B | CBM_21 | e2v8mB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: CBM_21 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.60.40.2440 | Mainly Beta | Sandwich | Immunoglobulin-like | Carbohydrate binding type-21 domain | CATH (4.3.0) |
D | 2.60.40.2440 | Mainly Beta | Sandwich | Immunoglobulin-like | Carbohydrate binding type-21 domain | CATH (4.3.0) |
A | 2.60.40.2440 | Mainly Beta | Sandwich | Immunoglobulin-like | Carbohydrate binding type-21 domain | CATH (4.3.0) |
B | 2.60.40.2440 | Mainly Beta | Sandwich | Immunoglobulin-like | Carbohydrate binding type-21 domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03370 | Carbohydrate/starch-binding module (family 21) (CBM_21) | Carbohydrate/starch-binding module (family 21) | This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein Swiss:O08541 has been shown to interact with glycogen synthase, phosphorylase kinase, ph ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
GLUCOAMYLASE A |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012341 | Six-hairpin glycosidase-like superfamily | Homologous Superfamily | |
IPR000165 | Glucoamylase | Family | |
IPR046966 | Glucoamylase, active site | Conserved Site | |
IPR005036 | CBM21 (carbohydrate binding type-21) domain | Domain | |
IPR008928 | Six-hairpin glycosidase superfamily | Homologous Superfamily | |
IPR038175 | CBM21 domain superfamily | Homologous Superfamily | |
IPR011613 | GH15-like domain | Domain |