STRUCTURE OF TOMATO BUSHY STUNT VIRUS. V. COAT PROTEIN SEQUENCE DETERMINATION AND ITS STRUCTURAL IMPLICATIONS
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d2tbvc_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tombusviridae-like VP | Tombusvirus coat protein | (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
| B | d2tbvb_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tombusviridae-like VP | Tombusvirus coat protein | (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
| A | d2tbva_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Tombusviridae-like VP | Tombusvirus coat protein | (Tomato bushy stunt virus ) [TaxId: 12145 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | CNV-CP protruding P-domain-like | 8089975 | 3002408 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8040786 | 3000918 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | CNV-CP protruding P-domain-like | 8089975 | 3002408 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8040786 | 3000918 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Tombusviridae-like VP | 8028407 | 4003478 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | CNV-CP protruding P-domain-like | 8089974 | 4007693 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Positive stranded ssRNA viruses-like | 8040786 | 3000918 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | CNV-CP protruding P-domain-like | 8089975 | 3002408 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | SRP54_N | e2tbvC1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Fibronectin type I module-like | T: Fibronectin type I module | F: SRP54_N | ECOD (v294.2) |
| B | HypA | e2tbvB1 | A: beta barrels | X: Lipocalins/Streptavidin | H: Fibronectin type I module-like | T: Fibronectin type I module | F: HypA | ECOD (v294.2) |
| A | Viral_coat | e2tbvA2 | A: beta barrels | X: Caspase-like | H: Caspase-like | T: Caspase-like | F: Viral_coat | ECOD (v294.2) |
| A | Peptidase_C80 | e2tbvA3 | A: beta barrels | X: Caspase-like | H: Caspase-like | T: Caspase-like | F: Peptidase_C80 | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| B | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
| A | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| TOMATO BUSHY STUNT VIRUS | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
| IPR000937 | Icosahedral viral capsid protein, S domain | Domain | |
| IPR055068 | Coat protein, P (projecting) domain | Domain |














