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 2RIJ | pdb_00002rij

Crystal structure of a putative 2,3,4,5-tetrahydropyridine-2-carboxylate n-succinyltransferase (cj1605c, dapd) from campylobacter jejuni at 1.90 A resolution

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyTetrahydrodipicolinate N-succinyltransferase, Mtb-DapD-like 8050594 4006968 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyTrimeric LpxA-like enzymes 8050590 3001804 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACalreticuline2rijA1 A: alpha arraysX: Major vault protein (MVP) structural repeat domainH: Major vault protein (MVP) structural repeat domainT: Major vault protein (MVP) structural repeat domainF: CalreticulinECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.70.2010 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
A3.30.60.70 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2) domain 1CATH (4.3.0)
A2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF14790Tetrahydrodipicolinate N-succinyltransferase N-terminal (THDPS_N)Tetrahydrodipicolinate N-succinyltransferase N-terminalThis is the N-terminal domain of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [1]. Domain
PF14789Tetrahydrodipicolinate N-succinyltransferase middle (THDPS_M)Tetrahydrodipicolinate N-succinyltransferase middleThis is the middle domain of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [1]. Domain
PF14602Hexapeptide repeat of succinyl-transferase (Hexapep_2)Hexapeptide repeat of succinyl-transferase- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
IPR0383612,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamilyHomologous Superfamily
IPR026586Type 2 tetrahydrodipicolinate N-succinyltransferase familyFamily
IPR0327842,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domainDomain
IPR001451Hexapeptide repeatRepeat