2RG7
Apo- Crystal Structure of a Periplasmic Heme Binding Protein from Shigella dysenteriae
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2rg7a_ | Alpha and beta proteins (a/b) | Chelatase-like | 'Helical backbone' metal receptor | automated matches | automated matches | (Shigella dysenteriae ) [TaxId: 622 ], | SCOPe (2.08) |
B | d2rg7b_ | Alpha and beta proteins (a/b) | Chelatase-like | 'Helical backbone' metal receptor | automated matches | automated matches | (Shigella dysenteriae ) [TaxId: 622 ], | SCOPe (2.08) |
C | d2rg7c_ | Alpha and beta proteins (a/b) | Chelatase-like | 'Helical backbone' metal receptor | automated matches | automated matches | (Shigella dysenteriae ) [TaxId: 622 ], | SCOPe (2.08) |
D | d2rg7d_ | Alpha and beta proteins (a/b) | Chelatase-like | 'Helical backbone' metal receptor | automated matches | automated matches | (Shigella dysenteriae ) [TaxId: 622 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peripla_BP_2_N | e2rg7A1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: Peripla_BP_2_N | ECOD (1.6) |
B | Peripla_BP_2_N | e2rg7B1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: Peripla_BP_2_N | ECOD (1.6) |
C | Peripla_BP_2_N | e2rg7C1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: Peripla_BP_2_N | ECOD (1.6) |
D | Peripla_BP_2_N | e2rg7D1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: Peripla_BP_2_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.1980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nitrogenase molybdenum iron protein domain | CATH (4.3.0) |
B | 3.40.50.1980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nitrogenase molybdenum iron protein domain | CATH (4.3.0) |
C | 3.40.50.1980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nitrogenase molybdenum iron protein domain | CATH (4.3.0) |
D | 3.40.50.1980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nitrogenase molybdenum iron protein domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01497 | Periplasmic binding protein (Peripla_BP_2) | Periplasmic binding protein | This is sensor domain found in bacterial periplasmic binding proteins, several of which are involved in iron and cobalamin transport [1,2,3]. Among its ligands are siderophores bacillibactin, enterobactin and iron(III)-hydroxamates (Matilla et. al., ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Periplasmic HEME binding protein | - | - |