Annotations: 2PZZ

2.2 A resolution crystal structure of UPF0201 protein from Methanococcus jannaschii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d2pzzd1	Alpha and beta proteins (a+b)	RL5-like	RL5-like	SSO1042-like	Hypotheical protein MJ1564	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
D	d2pzzd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
C	d2pzzc1	Alpha and beta proteins (a+b)	RL5-like	RL5-like	SSO1042-like	Hypotheical protein MJ1564	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
C	d2pzzc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
B	d2pzzb1	Alpha and beta proteins (a+b)	RL5-like	RL5-like	SSO1042-like	Hypotheical protein MJ1564	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
B	d2pzzb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
A	d2pzza1	Alpha and beta proteins (a+b)	RL5-like	RL5-like	SSO1042-like	Hypotheical protein MJ1564	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
A	d2pzza2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	RL5-like	8036172	3001709	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RL5-like	8036172	3001709	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RL5-like	8036172	3001709	SCOP2B (2022-06-29)
A	SCOP2 Family	SSO1042-like	8023792	4002138	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RL5-like	8036172	3001709	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	DAO, NAD_binding_8	e2pzzD1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: DAO, NAD_binding_8	ECOD (v295.2)
C	DAO, NAD_binding_8	e2pzzC1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: DAO, NAD_binding_8	ECOD (v295.2)
B	DAO, NAD_binding_8	e2pzzB1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: DAO, NAD_binding_8	ECOD (v295.2)
A	RNA_binding	e2pzzA1	A: a+b two layers	X: Ribosomal protein L5	H: Ribosomal protein L5	T: Ribosomal protein L5	F: RNA_binding	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.1440.10	Alpha Beta	2-Layer Sandwich	50s Ribosomal Protein L5	Chain: A,	CATH (4.3.0)
C	3.30.1440.10	Alpha Beta	2-Layer Sandwich	50s Ribosomal Protein L5	Chain: A,	CATH (4.3.0)
B	3.30.1440.10	Alpha Beta	2-Layer Sandwich	50s Ribosomal Protein L5	Chain: A,	CATH (4.3.0)
A	3.30.1440.10	Alpha Beta	2-Layer Sandwich	50s Ribosomal Protein L5	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01877	RNA binding (RNA_binding)	RNA binding	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR022803	Large ribosomal subunit protein uL5 domain superfamily	Homologous Superfamily
A, B, C, D	IPR002739	RNA-binding protein PAB1135-like	Family