2PMS
Crystal structure of the complex of human lactoferrin N-lobe and lactoferrin-binding domain of pneumococcal surface protein A
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d2pmsc1 | Coiled coil proteins | Antiparallel coiled-coil | PspA lactotransferrin-binding region | PspA lactotransferrin-binding region | Pneumococcal surface protein A, PspA | (Streptococcus pneumoniae ) [TaxId: 1313 ], | SCOPe (2.08) |
C | d2pmsc2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Streptococcus pneumoniae ) [TaxId: 1313 ], | SCOPe (2.08) |
D | d2pmsd2 | Coiled coil proteins | Antiparallel coiled-coil | PspA lactotransferrin-binding region | PspA lactotransferrin-binding region | Pneumococcal surface protein A, PspA | (Streptococcus pneumoniae ) [TaxId: 1313 ], | SCOPe (2.08) |
D | d2pmsd3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Streptococcus pneumoniae ) [TaxId: 1313 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Type 2 solute binding protein-like | 8042421 | 3000083 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Type 2 solute binding protein-like | 8042421 | 3000083 | SCOP2B (2022-06-29) |
C | SCOP2 Family | PspA lactotransferrin-binding region | 8023470 | 4002946 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | PspA lactotransferrin-binding region | 8035850 | 3001929 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | PspA lactotransferrin-binding region | 8035850 | 3001929 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Transferrin_2nd | e2pmsA1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Transferrin_2nd | ECOD (1.6) |
A | Transferrin_1st | e2pmsA2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Transferrin_1st | ECOD (1.6) |
B | Transferrin_2nd | e2pmsB1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Transferrin_2nd | ECOD (1.6) |
B | Transferrin_1st | e2pmsB2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: Transferrin_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
B | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
C | 6.10.140.920 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
D | 6.10.140.920 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00405 | Transferrin (Transferrin) | Transferrin | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001156 | Transferrin-like domain | Domain | |
IPR016357 | Transferrin | Family | |
IPR018195 | Transferrin family, iron binding site | Binding Site | |
IPR030684 | Lactotransferrin | Family | |
IPR018337 | Cell wall/choline-binding repeat | Repeat |