2PM7
Crystal structure of yeast Sec13/31 edge element of the COPII vesicular coat, selenomethionine version
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Coat and nuclear envelope proteins | 8054126 | 3002276 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Protein transport protein SEC16/SEC31 | 8048127 | 4005973 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Coat and nuclear envelope proteins | 8054126 | 3002276 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Sec16_C_1 | e2pm7A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology) | T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | F: Sec16_C_1 | ECOD (1.6) |
C | Sec16_C_1 | e2pm7C1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology) | T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | F: Sec16_C_1 | ECOD (1.6) |
B | ANAPC4_WD40_19 | e2pm7B1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_19 | ECOD (1.6) |
D | ANAPC4_WD40_19 | e2pm7D1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_19 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.40.1030 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
C | 1.25.40.1030 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
B | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
D | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12931 | Sec23-binding domain of Sec16 (Sec16_C) | Sec23-binding domain of Sec16 | Sec16 is a multi-domain vesicle coat protein. The C-terminal region is the part that binds to Sec23, a COPII vesicle coat protein. This association is part of the transport vesicle coat structure [1]. | Domain | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR021614 | Protein transport protein SEC31 | Family | |
IPR019775 | WD40 repeat, conserved site | Conserved Site | |
IPR040251 | Protein transport protein SEC31-like | Family | |
IPR009917 | SRA1/Sec31 | Domain | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR001680 | WD40 repeat | Repeat | |
IPR024298 | Ancestral coatomer element 1, Sec16/Sec31 | Domain | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR037363 | Sec13/Seh1 family | Family | |
IPR001680 | WD40 repeat | Repeat |