2PIF | pdb_00002pif

Crystal structure of UPF0317 protein PSPTO_5379 from Pseudomonas syringae pv. tomato. NorthEast Structural Genomics target PsR181

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2pifb_	Alpha and beta proteins (a+b)	PSTPO5379-like	PSTPO5379-like	PSTPO5379-like	Uncharacterized protein PSTPO5379	(Pseudomonas syringae pv. tomato str. DC3000 ) [TaxId: 223283 ],	SCOPe (2.08)
A	d2pifa1	Alpha and beta proteins (a+b)	PSTPO5379-like	PSTPO5379-like	PSTPO5379-like	Uncharacterized protein PSTPO5379	(Pseudomonas syringae pv. tomato str. DC3000 ) [TaxId: 223283 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	PSTPO5379-like	8035666	3001531	SCOP2B (2022-06-29)
A	SCOP2 Family	PSTPO5379-like	8023286	4002639	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PSTPO5379-like	8035666	3001531	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e2pifB1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: Fer4,DUF3470	F:	ECOD (20:10:01)
A		e2pifA1	A: Alpha-beta plaits	X: Nitrogen repressor-like proteins	H: Nitrogen repressor-like proteins	T: D-Glu_cyclase	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.1640.10	Alpha Beta	3-Layer(aba) Sandwich	PSTPO5379-like	PSTPO5379-like	CATH (4.3.0)
B	3.30.2040.10	Alpha Beta	2-Layer Sandwich	PSTPO5379-like fold	PSTPO5379-like domain	CATH (4.3.0)
A	3.40.1640.10	Alpha Beta	3-Layer(aba) Sandwich	PSTPO5379-like	PSTPO5379-like	CATH (4.3.0)
A	3.30.2040.10	Alpha Beta	2-Layer Sandwich	PSTPO5379-like fold	PSTPO5379-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF07286	D-glutamate cyclase (D-Glu_cyclase)	D-glutamate cyclase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	UPF0317 protein PSPTO_5379	lyase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR009906	D-glutamate cyclase-like domain	Domain
A, B	IPR016938	Uncharacterised protein family UPF0317	Family
A, B	IPR038021	Putative hydro-lyase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.