Annotations: 2P9S

Structure of bovine Arp2/3 complex co-crystallized with ATP/Mg2+

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
G	d2p9sg_	All alpha proteins	alpha-alpha superhelix	Arp2/3 complex 16 kDa subunit ARPC5	Arp2/3 complex 16 kDa subunit ARPC5	automated matches	cattle (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
F	d2p9sf_	Alpha and beta proteins (a+b)	Secretion chaperone-like	Arp2/3 complex subunits	Arp2/3 complex subunits	ARPC4 (20 kDa subunit)	cattle (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
E	d2p9se_	All alpha proteins	Arp2/3 complex 21 kDa subunit ARPC3	Arp2/3 complex 21 kDa subunit ARPC3	Arp2/3 complex 21 kDa subunit ARPC3	automated matches	cattle (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
D	d2p9sd1	Alpha and beta proteins (a+b)	Secretion chaperone-like	Arp2/3 complex subunits	Arp2/3 complex subunits	ARPC2 (34 kDa subunit)	cattle (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
C	d2p9sc_	All beta proteins	7-bladed beta-propeller	WD40 repeat-like	WD40-repeat	automated matches	cattle (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
B	d2p9sb_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	Actin/HSP70	Actin-related protein 2, Arp2	cattle (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
A	d2p9sa1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	Actin/HSP70	Actin-related protein 3, Arp3	cattle (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Arp2/3 complex 16 kDa subunit ARPC5	8037905	3001882	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Arp2/3 complex subunits	8037903	3000751	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Arp2/3 complex 21 kDa subunit ARPC3	8037901	3001830	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Arp2/3 complex subunits	8037898	3000751	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Arp2/3 complex subunits	8037899	3000751	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	WD40 repeat-like	8037895	3001694	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8037893	3000092	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-like ATPases	8037891	3000092	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-like ATPases	8037889	3000092	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	Seryl_tRNA_N	e2p9sG1	A: alpha arrays	X: Urease, gamma-subunit	H: Urease, gamma-subunit	T: Urease, gamma-subunit	F: Seryl_tRNA_N	ECOD (v295.2)
F	Anthrax_toxA	e2p9sF1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Anthrax_toxA	ECOD (v295.2)
E	Cation_efflux	e2p9sE1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
D	Anthrax_toxA	e2p9sD1	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Anthrax_toxA	ECOD (v295.2)
C	FG-GAP, FG-GAP_3	e2p9sC1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: FG-GAP, FG-GAP_3	ECOD (v295.2)
B	DAO, NAD_binding_8	e2p9sB1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: DAO, NAD_binding_8	ECOD (v295.2)
A	Hexokinase_2	e2p9sA1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: Hexokinase_2	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G	1.25.40.190	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Actin-related protein 2/3 complex subunit 5	CATH (4.3.0)
F	3.30.1460.20	Alpha Beta	2-Layer Sandwich	Yope Regulator	Chain: A,	CATH (4.3.0)
E	1.10.1760.10	Mainly Alpha	Orthogonal Bundle	Arp2/3 complex 21 kDa subunit ARPC3	Actin-related protein 2/3 complex subunit 3	CATH (4.3.0)
D	3.30.1460.20	Alpha Beta	2-Layer Sandwich	Yope Regulator	Chain: A,	CATH (4.3.0)
C	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
B	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
B	3.90.640.10	Alpha Beta	Alpha-Beta Complex	Actin	Chain A, domain 4	CATH (4.3.0)
A	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
A	2.30.36.70	Mainly Beta	Roll	Actin	Chain A, domain 2	CATH (4.3.0)
A	3.90.640.10	Alpha Beta	Alpha-Beta Complex	Actin	Chain A, domain 4	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D	PF04045	Arp2/3 complex, 34 kD subunit p34-Arc (P34-Arc)	Arp2/3 complex, 34 kD subunit p34-Arc	-	Family
C	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
A	PF00022	Actin (Actin)	Actin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G	Actin-related protein 2/3 complex subunit 5	protein-macromolecule adaptor activity molecular adaptor activity	actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization cell migration cell motility regulation of cytoskeleton organization actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization cell migration cell motility regulation of cytoskeleton organization regulation of cellular process regulation of cellular component organization regulation of actin filament-based process regulation of cellular component size cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly regulation of actin filament polymerization regulation of biological quality protein polymerization actin polymerization or depolymerization regulation of biological process regulation of actin filament organization actin filament polymerization protein-containing complex organization biological regulation regulation of actin polymerization or depolymerization regulation of cellular component biogenesis regulation of organelle organization regulation of protein polymerization regulation of actin filament length regulation of actin cytoskeleton organization regulation of supramolecular fiber organization regulation of anatomical structure size	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage chromosome cell cortex cortical cytoskeleton cell periphery membrane-bounded organelle nucleus intracellular membrane-bounded organelle
F	Actin-related protein 2/3 complex subunit 4	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding	protein polymerization actin polymerization or depolymerization actin filament polymerization actin cytoskeleton organization protein-containing complex organization actin filament organization cellular component organization cellular component biogenesis organelle organization cellular component assembly protein-containing complex assembly actin filament-based process cellular process cellular component organization or biogenesis protein polymerization actin polymerization or depolymerization actin filament polymerization actin cytoskeleton organization protein-containing complex organization actin filament organization cellular component organization cellular component biogenesis organelle organization cellular component assembly protein-containing complex assembly actin filament-based process cellular process cellular component organization or biogenesis supramolecular fiber organization cytoskeleton organization Arp2/3 complex-mediated actin nucleation actin nucleation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle
E	Actin-related protein 2/3 complex subunit 3	-	actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle
D	Actin-related protein 2/3 complex subunit 2	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding structural constituent of cytoskeleton structural molecule activity molecular adaptor activity	actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization protein polymerization actin polymerization or depolymerization actin filament polymerization actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization protein polymerization actin polymerization or depolymerization actin filament polymerization protein-containing complex organization cellular component biogenesis cellular component assembly protein-containing complex assembly regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization cell projection organization positive regulation of biological process plasma membrane bounded cell projection assembly regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization positive regulation of cellular process lamellipodium assembly regulation of biological process plasma membrane bounded cell projection organization positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly biological regulation positive regulation of lamellipodium assembly regulation of cellular component biogenesis positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly lamellipodium organization cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly actin cortical patch organization cortical actin cytoskeleton organization cortical cytoskeleton organization	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell projection cell leading edge plasma membrane bounded cell projection lamellipodium membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle cytosol Arp2/3 protein complex protein-containing complex cytoskeleton membraneless organelle intracellular membraneless organelle actin cytoskeleton synapse transport vesicle membrane presynapse bounding membrane of organelle vesicle membrane synaptic vesicle synaptic vesicle membrane transport vesicle membrane exocytic vesicle membrane cytoplasmic vesicle membrane secretory vesicle organelle membrane exocytic vesicle cell periphery muscle cell projection muscle cell projection membrane plasma membrane plasma membrane region cell projection membrane site of double-strand break site of DNA damage chromosome postsynapse nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen glutamatergic synapse
C	Actin-related protein 2/3 complex subunit 1B	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding	actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization cortical actin cytoskeleton organization cortical cytoskeleton organization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton membrane-bounded organelle nucleus cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B	Actin-like protein 2	structural constituent of cytoskeleton structural molecule activity	cellular response to stimulus regulation of DNA recombination regulation of cellular process response to stimulus regulation of double-strand break repair regulation of cellular response to stress positive regulation of biological process positive regulation of double-strand break repair via homologous recombination regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of response to stimulus positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress cellular response to stimulus regulation of DNA recombination regulation of cellular process response to stimulus regulation of double-strand break repair regulation of cellular response to stress positive regulation of biological process positive regulation of double-strand break repair via homologous recombination regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of response to stimulus positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress recombinational repair positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process double-strand break repair via homologous recombination positive regulation of cellular process DNA repair positive regulation of DNA recombination double-strand break repair regulation of biological process DNA recombination biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process positive regulation of double-strand break repair regulation of DNA repair regulation of double-strand break repair via homologous recombination positive regulation of DNA metabolic process DNA damage response regulation of response to stimulus metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of cellular component organization positive regulation of cellular component organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization lamellipodium assembly plasma membrane bounded cell projection organization positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly positive regulation of lamellipodium assembly regulation of cellular component biogenesis positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly lamellipodium organization cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly	cell periphery cell cortex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cell periphery cell cortex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle
A	Actin-like protein 3	structural constituent of cytoskeleton structural molecule activity	actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process actin cytoskeleton organization actin filament organization Arp2/3 complex-mediated actin nucleation cellular component organization organelle organization actin filament-based process cellular process cellular component organization or biogenesis actin nucleation supramolecular fiber organization cytoskeleton organization regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process regulation of cellular component organization positive regulation of cellular component organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly regulation of lamellipodium assembly regulation of lamellipodium organization positive regulation of cell projection organization lamellipodium assembly plasma membrane bounded cell projection organization positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly positive regulation of lamellipodium assembly regulation of cellular component biogenesis positive regulation of lamellipodium organization regulation of plasma membrane bounded cell projection assembly lamellipodium organization cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly organelle assembly cilium assembly cilium organization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle Arp2/3 protein complex protein-containing complex cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton site of double-strand break site of DNA damage chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G	IPR006789	Actin-related protein 2/3 complex subunit 5	Family
G	IPR036743	Actin-related protein 2/3 complex subunit 5 superfamily	Homologous Superfamily
F	IPR034666	Arp2/3 complex subunit 2/4	Homologous Superfamily
F	IPR008384	Actin-related protein 2/3 complex subunit 4	Family
E	IPR036753	Actin-related protein 2/3 complex subunit 3 superfamily	Homologous Superfamily
E	IPR007204	Actin-related protein 2/3 complex subunit 3	Family
D	IPR034666	Arp2/3 complex subunit 2/4	Homologous Superfamily
D	IPR007188	Actin-related protein 2/3 complex subunit 2	Family
C	IPR017383	Actin-related protein 2/3 complex subunit 1	Family
C	IPR001680	WD40 repeat	Repeat
C	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B	IPR020902	Actin/actin-like conserved site	Conserved Site
B	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
B	IPR004000	Actin family	Family
A	IPR020902	Actin/actin-like conserved site	Conserved Site
A	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A	IPR004000	Actin family	Family

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