2P3Y
Crystal structure of VPA0735 from Vibrio parahaemolyticus. NorthEast Structural Genomics target VpR109
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2p3ya1 | Multi-domain proteins (alpha and beta) | VPA0735-like | VPA0735-like | VPA0735-like | Hypothetical protein VPA0735 | (Vibrio parahaemolyticus RIMD 2210633 ) [TaxId: 223926 ], | SCOPe (2.08) |
B | d2p3yb_ | Multi-domain proteins (alpha and beta) | VPA0735-like | VPA0735-like | VPA0735-like | Hypothetical protein VPA0735 | (Vibrio parahaemolyticus RIMD 2210633 ) [TaxId: 223926 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | VPA0735 N-terminal domain-like | 8022962 | 4002668 | SCOP2 (2022-06-29) |
A | SCOP2 Family | VPA0735 C-terminal domain-like | 8054388 | 4007638 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | VPA0735 beta-sandwich domain-like | 8035342 | 3001579 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | VPA0735 beta-sandwich domain-like | 8054389 | 3001579 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | VPA0735 beta-sandwich domain-like | 8054389 | 3001579 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | VPA0735 beta-sandwich domain-like | 8035342 | 3001579 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DUF1214 | e2p3yA2 | A: beta sandwiches | X: jelly-roll | H: VPA0735-like (From Topology) | T: VPA0735-like | F: DUF1214 | ECOD (1.6) |
A | DUF1254 | e2p3yA1 | A: beta sandwiches | X: jelly-roll | H: VPA0735-like (From Topology) | T: VPA0735-like | F: DUF1254 | ECOD (1.6) |
B | DUF1214 | e2p3yB2 | A: beta sandwiches | X: jelly-roll | H: VPA0735-like (From Topology) | T: VPA0735-like | F: DUF1214 | ECOD (1.6) |
B | DUF1254 | e2p3yB1 | A: beta sandwiches | X: jelly-roll | H: VPA0735-like (From Topology) | T: VPA0735-like | F: DUF1254 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.20.25.10 | Mainly Beta | Single Sheet | N-terminal domain of TfIIb | CATH (4.3.0) | |
A | 1.10.3360.10 | Mainly Alpha | Orthogonal Bundle | VPA0735-like fold | VPA0735-like domain | CATH (4.3.0) |
A | 2.60.40.1610 | Mainly Beta | Sandwich | Immunoglobulin-like | Domain of unknown function DUF1254 | CATH (4.3.0) |
A | 2.60.120.600 | Mainly Beta | Sandwich | Jelly Rolls | Domain of unknown function DUF1214, C-terminal domain | CATH (4.3.0) |
B | 2.20.25.10 | Mainly Beta | Single Sheet | N-terminal domain of TfIIb | CATH (4.3.0) | |
B | 1.10.3360.10 | Mainly Alpha | Orthogonal Bundle | VPA0735-like fold | VPA0735-like domain | CATH (4.3.0) |
B | 2.60.40.1610 | Mainly Beta | Sandwich | Immunoglobulin-like | Domain of unknown function DUF1254 | CATH (4.3.0) |
B | 2.60.120.600 | Mainly Beta | Sandwich | Jelly Rolls | Domain of unknown function DUF1214, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06863 | Protein of unknown function (DUF1254) (DUF1254) | Protein of unknown function (DUF1254) | This family represents a conserved region about 130 residues long within hypothetical proteins of unknown function. Family members include eukaryotic, bacterial and archaeal proteins. | Domain | |
PF06742 | Protein of unknown function (DUF1214) (DUF1214) | Protein of unknown function (DUF1214) | This family represents the C-terminal region of several hypothetical proteins of unknown function. Family members are mostly bacterial, but a few are also found in eukaryotes and archaea. | Domain |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010679 | Domain of unknown function DUF1254 | Domain | |
IPR037050 | Domain of unknown function DUF1254 superfamily | Homologous Superfamily | |
IPR037049 | Domain of unknown function DUF1214, C-terminal domain superfamily | Homologous Superfamily | |
IPR010621 | Domain of unknown function DUF1214 | Domain |