2OXQ
Structure of the UbcH5 :CHIP U-box complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2oxqa1 | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | automated matches | zebrafish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
A | d2oxqa2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | zebrafish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
B | d2oxqb1 | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | automated matches | zebrafish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
B | d2oxqb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | zebrafish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
C | d2oxqc_ | Small proteins | RING/U-box | RING/U-box | U-box | automated matches | zebrafish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
D | d2oxqd_ | Small proteins | RING/U-box | RING/U-box | U-box | automated matches | zebrafish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | UBC-related | 8059963 | 4001046 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | UBC-like | 8059964 | 3000570 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | UBC-like | 8059964 | 3000570 | SCOP2B (2022-06-29) |
C | SCOP2 Family | U-box | 8068223 | 4003890 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | RING/U-box like | 8068224 | 3000160 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UQ_con | e2oxqA1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
B | UQ_con | e2oxqB1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
C | U-box | e2oxqC1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: U-box | ECOD (1.6) |
D | U-box | e2oxqD1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: U-box | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
B | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
C | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
D | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain | |
PF04564 | U-box domain (U-box) | U-box domain | The U-box is a domain of ~70 amino acids that is present in proteins from yeast to human. It consists of the beta-beta-alpha-beta-alpha- fold typical of U-box and RING domains. The central alpha helix is flanked by two prominent surface-exposed loop ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain | |
IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily | |
IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site | |
IPR045202 | CHIP , U-box domain | Domain | |
IPR003613 | U-box domain | Domain | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
IPR041312 | CHIP, N-terminal tetratricopeptide repeat domain | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR019734 | Tetratricopeptide repeat | Repeat |