Annotations: 2OUT

Solution Structure of HI1506, a Novel Two Domain Protein from Haemophilus influenzae

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2outa1	All alpha proteins	LEM/SAP HeH motif	Rho N-terminal domain-like	YqbF C-terminal domain-like	Uncharacterized protein HI1507 in Mu-like prophage FluMu region	(Haemophilus influenzae ) [TaxId: 727 ],	SCOPe (2.08)
A	d2outa2	Alpha and beta proteins (a+b)	GINS/PriA/YqbF domain	PriA/YqbF domain	YqbF N-terminal domain-like	Mu-like prophage FluMu protein gp35, HI1506	(Haemophilus influenzae ) [TaxId: 727 ],	SCOPe (2.08)
A	d2outa3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Haemophilus influenzae ) [TaxId: 727 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YqbF C-terminal domain-like	8022801	4001171	SCOP2 (2022-06-29)
A	SCOP2 Family	YqbF N-terminal domain-like	8022805	4001702	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Rho N-terminal domain-like	8035181	3001774	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PriA/YqbF domain	8035185	3000274	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FluMu_N	e2outA2	A: a+b two layers	X: L9 N-domain-like	H: GINS/PriA/YqbF domain	T: GINS/PriA/YqbF domain	F: FluMu_N	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.5.80	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
A	1.10.720.30	Mainly Alpha	Orthogonal Bundle	Transcription Termination Factor Rho, Rna-binding Domain	Chain A, Domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF17891	Mu-like prophage FluMu N-terminal domain (FluMu_N)	Mu-like prophage FluMu N-terminal domain	Structural analysis of HI1506 (also known as Mu-like prophage FluMu protein gp35) from Haemophilus influenzae show that HI1506 consists of two structured domains connected by an unstructured 30 amino acid loop. This entry is the N-terminal domain whi ...	Structural analysis of HI1506 (also known as Mu-like prophage FluMu protein gp35) from Haemophilus influenzae show that HI1506 consists of two structured domains connected by an unstructured 30 amino acid loop. This entry is the N-terminal domain which comprises a three-stranded antiparallel beta-sheet packed against an alpha-helix [1].	Domain
A	PF12949	HeH/LEM domain (HeH)	HeH/LEM domain	This is a HeH domain. HeH domains form helix-extended loop-helix (HeH) structures. It was demonstrated that the DNA-binding activity of the HEH/LEM domain assists the association of proteins with the centromeric region [1]. This domain is closely rel ...	This is a HeH domain. HeH domains form helix-extended loop-helix (HeH) structures. It was demonstrated that the DNA-binding activity of the HEH/LEM domain assists the association of proteins with the centromeric region [1]. This domain is closely related to Pfam:PF03020 and Pfam:PF02037.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Mu-like prophage FluMu protein gp35, Protein HI1507 in Mu-like prophage FluMu region	DNA binding binding nucleic acid binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036361	SAP domain superfamily	Homologous Superfamily
A	IPR025856	HeH/LEM domain	Domain
A	IPR036269	Rho termination factor, N-terminal domain superfamily	Homologous Superfamily
A	IPR041227	Mu-like prophage FluMu N-terminal domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.