Annotations: 2ODJ

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2odjb1	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Outer membrane carboxylate (Occ) channels	OccD-like (OprD-like)	OprD porin (OccD1)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
B	d2odjb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
B	d2odjb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
A	d2odja1	Membrane and cell surface proteins and peptides	Transmembrane beta-barrels	Outer membrane carboxylate (Occ) channels	OccD-like (OprD-like)	OprD porin (OccD1)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
A	d2odja3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
A	d2odja2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Rpf1_C	e2odjB1	A: beta barrels	X: HTH	H: Nudix	T: Nudix	F: Rpf1_C	ECOD (v294.2)
A	AIRS	e2odjA1	A: beta barrels	X: Bromodomain-like	H: SH3	T: SH3	F: AIRS	ECOD (v294.2)

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)
A	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)

Chains	Accession	Name	Description	Comments	Source
A, B	PF03573	outer membrane porin, OprD family (OprD)	outer membrane porin, OprD family	-	Family

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Porin D	wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity peptidase activity serine hydrolase activity catalytic activity, acting on a protein serine-type peptidase activity hydrolase activity catalytic activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process amino acid transport localization basic amino acid transport transport establishment of localization monoatomic ion transport	cellular anatomical structure membrane outer membrane protein-containing complex pore complex membrane protein complex cell outer membrane external encapsulating structure extracellular region cell envelope

Chains	Accession	Name	Type
A, B	IPR023614	Porin domain superfamily	Homologous Superfamily
A, B	IPR005318	Outer membrane porin, bacterial	Family

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Transmembrane	Beta-barrel transmembrane	OprD/AlgE superfamily (n=18,S=22)	Outer membrane porin (Opr)

Chains	External Link	Comment
A, B	PDBTM	Annotated as membrane protein by PDBTM

Chains	External Link	Comment
A, B	MemProtMD	Annotated as membrane protein by MemProtMD

Chains	Resource Link	Group	Subgroup	Protein
A, B	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Outer Membrane Carboxylate Channels (Occ)	OccD1 (OprD) basic amino acid uptake channel

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

2ODJ | pdb_00002odj