2NTB
Crystal structure of pectin methylesterase in complex with hexasaccharide V
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2ntba_ | All beta proteins | Single-stranded right-handed beta-helix | Pectin lyase-like | Pectin methylesterase | automated matches | (Dickeya dadantii 3937 ) [TaxId: 198628 ], | SCOPe (2.08) |
B | d2ntbb_ | All beta proteins | Single-stranded right-handed beta-helix | Pectin lyase-like | Pectin methylesterase | automated matches | (Dickeya dadantii 3937 ) [TaxId: 198628 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pectinesterase | e2ntbA1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Pectinesterase | ECOD (1.6) |
B | Pectinesterase | e2ntbB1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Pectinesterase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
B | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01095 | Pectinesterase (Pectinesterase) | Pectinesterase | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012334 | Pectin lyase fold | Homologous Superfamily | |
IPR053505 | Pectinesterase | Family | |
IPR000070 | Pectinesterase, catalytic | Domain | |
IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily | |
IPR033131 | Pectinesterase, Asp active site | Active Site |