2M8B
Solution structure of AhPDF1 from Arabidopsis halleri
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d2m8bb1 | Small proteins | Knottins (small inhibitors, toxins, lectins) | Scorpion toxin-like | Plant defensins | automated matches | (Arabidopsis halleri ) [TaxId: 81970 ], | SCOPe (2.08) |
A [auth B] | d2m8bb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Arabidopsis halleri ) [TaxId: 81970 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2 Family | Plant defensins | 8080005 | 4003181 | SCOP2 (2022-06-29) |
A [auth B] | SCOP2 Superfamily | Scorpion toxin-like | 8080006 | 3000309 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Gamma-thionin | e2m8bB1 | A: few secondary structure elements | X: omega toxin-like | H: omega toxin-related | T: Scorpion toxin-like | F: Gamma-thionin | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.30.30.10 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | Knottin, scorpion toxin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF00304 | Gamma-thionin family (Gamma-thionin) | Gamma-thionin family | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR036574 | Knottin, scorpion toxin-like superfamily | Homologous Superfamily |
A [auth B] | IPR008176 | Defensin, plant | Family |
A [auth B] | IPR003614 | Knottin, scorpion toxin-like | Domain |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Monotopic/peripheral | Alpha + Beta monotopic/peripheral | Scorpion toxin-like knottin | Plant defensins |