Annotations: 2LZP

Structure of NS2(2-32) GBVB protein

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	NS2 peptide	DNA binding nucleic acid conformation isomerase activity isomerase activity binding single-stranded DNA binding catalytic activity, acting on a nucleic acid nucleic acid binding DNA/DNA annealing activity catalytic activity, acting on DNA annealing activity catalytic activity macromolecular conformation isomerase activity RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity DNA binding nucleic acid conformation isomerase activity isomerase activity binding single-stranded DNA binding catalytic activity, acting on a nucleic acid nucleic acid binding DNA/DNA annealing activity catalytic activity, acting on DNA annealing activity catalytic activity macromolecular conformation isomerase activity RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA RNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity endopeptidase activity RNA folding chaperone RNA strand annealing activity RNA binding single-stranded RNA binding SH3 domain binding protein binding protein domain specific binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding helicase activity RNA helicase activity ATP-dependent activity, acting on RNA ATP-dependent activity cysteine-type peptidase activity cysteine-type endopeptidase activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity structural molecule activity cation binding transition metal ion binding zinc ion binding metal ion binding	RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process viral genome replication biosynthetic process viral RNA genome replication viral process metabolic process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process viral genome replication biosynthetic process viral RNA genome replication viral process metabolic process cellular process macromolecule metabolic process biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction regulation of cellular process catabolic process negative regulation of biological process macromolecule catabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process negative regulation of macromolecule metabolic process negative regulation of catabolic process regulation of biosynthetic process regulation of biological process negative regulation of metabolic process biological regulation negative regulation of RNA catabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression nucleobase-containing compound catabolic process RNA stabilization regulation of gene expression regulation of RNA stability nucleic acid catabolic process regulation of macromolecule biosynthetic process regulation of metabolic process negative regulation of RNA metabolic process symbiont-mediated perturbation of host cellular process symbiont-mediated perturbation of host process symbiont-mediated perturbation of host autophagy modulation of process of another organism symbiont-mediated activation of host autophagy symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of host interferon-mediated signaling pathway symbiont-mediated suppression of host type I interferon-mediated signaling pathway symbiont-mediated perturbation of host signal transduction pathway symbiont-mediated transformation of host cell fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport establishment of localization symbiont-mediated perturbation of host defense response symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity symbiont-mediated suppression of host pathogen-associated molecular pattern receptor signaling pathway symbiont-mediated perturbation of host immune response symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host innate immune response symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host proteolysis protein metabolic process	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host cell lipid droplet host intracellular region other organism part host cell cytoplasm part host intracellular membrane-bounded organelle host cell mitochondrion host intracellular organelle host cell endoplasmic reticulum host cell membrane host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host cell lipid droplet host intracellular region other organism part host cell cytoplasm part host intracellular membrane-bounded organelle host cell mitochondrion host intracellular organelle host cell endoplasmic reticulum host cell membrane host cell endomembrane system host cell endoplasmic reticulum membrane viral nucleocapsid viral capsid virion component host cell perinuclear region of cytoplasm virion membrane host cell nucleus viral membrane viral envelope protein-containing complex protein-DNA complex ribonucleoprotein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A	IPR011492	Non-structural protein NS3-like, DEAD-box helicase, flavivirus	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A	IPR002868	Hepatitis C virus, Non-structural 5a protein	Domain
A	IPR038170	NS5A domain 1a superfamily	Homologous Superfamily
A	IPR002518	Hepatitis C virus, Non-structural protein NS2	Domain
A	IPR013192	Hepatitis C virus, Non-structural 5a protein, domain 1a	Domain
A	IPR002521	Hepatitis C virus, Core protein, C-terminal	Domain
A	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
A	IPR000745	Hepatitis C virus, Non-structural protein NS4a	Domain
A	IPR002166	RNA dependent RNA polymerase, hepatitis C virus	Family
A	IPR002519	Hepatitis C virus, Envelope glycoprotein E1	Domain
A	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A	IPR013193	Hepatitis C virus non-structural 5a, 1B domain	Domain
A	IPR004109	Hepatitis C virus, NS3 protease	Domain
A	IPR007094	RNA-directed RNA polymerase, catalytic domain	Domain
A	IPR001490	Hepatitis C virus, Non-structural protein NS4b	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Peptides	Alpha-helical peptides	Viral fusion and anchor peptides	Membrane anchor domain of viral protease

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.