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 2LRM | pdb_00002lrm

Assignment and structure of E coli periplasmic protein YmgD

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyHdeA-like 8091084 3000453 SCOP2B (2022-06-29)
ASCOP2 FamilyYmgD-lite 8045622 4004572 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHdeA-like 8091084 3000453 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BFtsJe2lrmB1 A: alpha arraysX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: FtsJECOD (v295.2)
AHSP90,HATPase_c_3e2lrmA1 A: alpha arraysX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: HSP90,HATPase_c_3ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B1.10.890.30 Mainly Alpha Orthogonal Bundle 10k-s Protein, Hypothetical Protein A Chain ACATH (4.3.0)
A1.10.890.30 Mainly Alpha Orthogonal Bundle 10k-s Protein, Hypothetical Protein A Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF16456YmgD protein (YmgD)YmgD proteinThis family of proteins is found in bacteria. Proteins in this family are approximately 110 amino acids in length. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Uncharacterized protein ymgD- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR038304YmgD domain superfamilyHomologous Superfamily
A, B
IPR032497Uncharacterised protein YmgDFamily