2LMC
Structure of T7 transcription factor Gp2-E. coli RNAp jaw domain complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RNA_pol_inhib | e2lmcA1 | A: a+b two layers | X: GP2-like | H: GP2 (From Topology) | T: GP2 | F: RNA_pol_inhib | ECOD (1.6) |
B | PRK00566_3rd | e2lmcB1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PRK00566_3rd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.510 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | RNA polymerase inhibitor | CATH (4.3.0) |
B | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16857 | RNA polymerase inhibitor (RNA_pol_inhib) | RNA polymerase inhibitor | This bacteriophage protein inhibits the bacterial host RNA polymerase by interacting with the RpoC subunit and inhibiting the formation of a promoter complex [1-3]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016412 | RNA polymerase inhibitor | Family | |
IPR038715 | RNA polymerase inhibitor superfamily | Homologous Superfamily | |
IPR007081 | RNA polymerase Rpb1, domain 5 | Domain | |
IPR045867 | DNA-directed RNA polymerase, subunit beta-prime | Family | |
IPR007083 | RNA polymerase Rpb1, domain 4 | Domain | |
IPR044893 | RNA polymerase Rpb1, clamp domain superfamily | Homologous Superfamily | |
IPR006592 | RNA polymerase, N-terminal | Domain | |
IPR007066 | RNA polymerase Rpb1, domain 3 | Domain | |
IPR012754 | DNA-directed RNA polymerase, subunit beta-prime, bacterial type | Family | |
IPR042102 | RNA polymerase Rpb1, domain 3 superfamily | Homologous Superfamily | |
IPR000722 | RNA polymerase, alpha subunit | Domain | |
IPR038120 | RNA polymerase Rpb1, funnel domain superfamily | Homologous Superfamily | |
IPR007080 | RNA polymerase Rpb1, domain 1 | Domain |