2L6Z
haddock model of GATA1NF:Lmo2LIM2-Ldb1LID with FOG
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GATA | e2l6zA1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: GATA | ECOD (1.6) |
B | zf-C2H2_22 | e2l6zB1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: zf-C2H2_22 | ECOD (1.6) |
C | LIM_N_1 | e2l6zC1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: LIM_N_1 | ECOD (1.6) |
C | KOG2181_1,LIM_C_3 | e2l6zC2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: KOG2181_1,LIM_C_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.10.110.10 | Mainly Beta | Ribbon | Cysteine Rich Protein | Cysteine Rich Protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00320 | GATA zinc finger (GATA) | GATA zinc finger | This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain. | Domain | |
PF17916 | LIM interaction domain (LID) (LID) | LIM interaction domain (LID) | LIM-homeodomain (LIM-HD) proteins are transcription factors that are critical in the development of many cell types and tissues. The activity of LIM-HD proteins is dependent on the essential cofactor LIM domain-binding protein 1 (Ldb1). This entry re ... | Domain | |
PF00412 | LIM domain (LIM) | LIM domain | This family represents two copies of the LIM structural domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000679 | Zinc finger, GATA-type | Domain | |
IPR013088 | Zinc finger, NHR/GATA-type | Homologous Superfamily | |
IPR039355 | Transcription factor GATA | Family | |
IPR013087 | Zinc finger C2H2-type | Domain | |
IPR036236 | Zinc finger C2H2 superfamily | Homologous Superfamily | |
IPR039746 | FOG family | Family | |
IPR034731 | Zinc finger CCHC FOG-type | Domain | |
IPR029005 | LIM-domain binding protein/SEUSS | Family | |
IPR041363 | LIM interaction domain | Domain | |
IPR001781 | Zinc finger, LIM-type | Domain | |
IPR050945 | LMO/RBTN Transcription Factors | Family |