2K05
Structure of SDF1 in complex with the CXCR4 N-terminus containing sulfotyrosines at postitions 7, 12 and 21
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2k05a_ | Alpha and beta proteins (a+b) | IL8-like | Interleukin 8-like chemokines | Interleukin 8-like chemokines | Stromal cell-derived factor-1 (SDF-1) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d2k05c_ | Alpha and beta proteins (a+b) | IL8-like | Interleukin 8-like chemokines | Interleukin 8-like chemokines | Stromal cell-derived factor-1 (SDF-1) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IL8_1 | e2k05A1 | A: beta barrels | X: IL8-related (From Homology) | H: IL8-related | T: IL8 | F: IL8_1 | ECOD (1.6) |
C | IL8_1 | e2k05C1 | A: beta barrels | X: IL8-related (From Homology) | H: IL8-related | T: IL8 | F: IL8_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.50.40 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
C | 2.40.50.40 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C-X-C chemokine receptor type 4 | CXCR4 | Homo sapiens (human) | - | - | RPI | CXCR4 | IMGT (202442-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00048 | Small cytokines (intecrine/chemokine), interleukin-8 like (IL8) | Small cytokines (intecrine/chemokine), interleukin-8 like | Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds. | Domain | |
PF12109 | CXCR4 Chemokine receptor N terminal (CXCR4_N) | CXCR4 Chemokine receptor N terminal | CXCR4 and its ligand stromal cell-derived factor-1 (a.k.a. CXCL12) are essential for proper fetal development. CXCR4 is also the major coreceptor for T-tropic strains of human immunodeficiency virus 1 (HIV-1), and SDF-1 inhibits HIV-1 infection. Addi ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001811 | Chemokine interleukin-8-like domain | Domain | |
IPR036048 | Chemokine interleukin-8-like superfamily | Homologous Superfamily | |
IPR039809 | Chemokine beta/gamma/delta | Family | |
IPR033899 | CXC Chemokine domain | Domain | |
IPR000355 | Chemokine receptor family | Family | |
IPR022726 | CXC chemokine receptor 4 N-terminal domain | Domain | |
IPR000276 | G protein-coupled receptor, rhodopsin-like | Family | |
IPR017452 | GPCR, rhodopsin-like, 7TM | Domain | |
IPR001277 | CXC chemokine receptor 4/atypical chemokine receptor 2 | Family | |
IPR050119 | C-C chemokine receptor type 1-9-like | Family |