Annotations: 2JK4

Structure of the human voltage-dependent anion channel

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	zf-CCCH_4	e2jk4A1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: zf-CCCH_4	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01459	Eukaryotic porin (Porin_3)	Eukaryotic porin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1	sterol binding binding alcohol binding steroid binding lipid binding cholesterol binding small molecule binding ceramide binding sphingolipid binding protein binding transmembrane transporter binding kinase binding enzyme binding protein kinase binding sterol binding binding alcohol binding steroid binding lipid binding cholesterol binding small molecule binding ceramide binding sphingolipid binding protein binding transmembrane transporter binding kinase binding enzyme binding protein kinase binding oxysterol binding passive transmembrane transporter activity gated channel activity monoatomic ion channel activity channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity cation binding ion binding phosphatidylcholine binding phospholipid binding quaternary ammonium group binding identical protein binding monoatomic anion transmembrane transporter activity voltage-gated monoatomic anion channel activity monoatomic anion channel activity	regulation of biological process catabolic process regulation of cellular process autophagy biological regulation regulation of catabolic process regulation of autophagy cellular process metabolic process regulation of autophagy of mitochondrion process utilizing autophagic mechanism regulation of metabolic process autophagy of mitochondrion transport regulation of biological process catabolic process regulation of cellular process autophagy biological regulation regulation of catabolic process regulation of autophagy cellular process metabolic process regulation of autophagy of mitochondrion process utilizing autophagic mechanism regulation of metabolic process autophagy of mitochondrion transport monoatomic ion transmembrane transport establishment of localization calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport localization mitochondrial calcium ion transmembrane transport monoatomic ion transport calcium import into the mitochondrion monoatomic cation transport calcium ion transmembrane transport regulation of calcium ion transport regulation of localization negative regulation of monoatomic ion transport negative regulation of biological process negative regulation of transport regulation of monoatomic ion transmembrane transport negative regulation of transmembrane transport regulation of calcium ion transmembrane transport negative regulation of monoatomic ion transmembrane transport regulation of calcium import into the mitochondrion negative regulation of cellular process negative regulation of cation transmembrane transport regulation of metal ion transport negative regulation of calcium import into the mitochondrion regulation of transport regulation of monoatomic ion transport negative regulation of calcium ion transport regulation of transmembrane transport regulation of monoatomic cation transmembrane transport negative regulation of calcium ion transmembrane transport negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death developmental process epithelium development cellular developmental process cell differentiation anatomical structure development tissue development epithelial cell differentiation animal gross anatomical part developmental process regulation of type 2 mitophagy macroautophagy positive regulation of type 2 mitophagy positive regulation of biological process positive regulation of autophagy of mitochondrion positive regulation of metabolic process mitophagy positive regulation of macroautophagy positive regulation of cellular process positive regulation of autophagy positive regulation of mitophagy regulation of mitophagy positive regulation of catabolic process regulation of macroautophagy type 2 mitophagy monoatomic anion transport negative regulation of metabolic process reactive oxygen species metabolic process negative regulation of reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process cellular localization establishment of localization in cell intracellular transport mitochondrial transmembrane transport mitochondrial transport pyruvate metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process carboxylic acid biosynthetic process biosynthetic process pyruvate biosynthetic process small molecule metabolic process monocarboxylic acid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle mitochondrial membrane organelle envelope mitochondrial envelope organelle membrane cell periphery plasma membrane membrane microdomain membrane raft organelle outer membrane bounding membrane of organelle mitochondrial outer membrane outer membrane membrane-enclosed lumen intracellular membraneless organelle nucleoid mitochondrial matrix intracellular organelle lumen organelle lumen membraneless organelle mitochondrial nucleoid mitochondrial permeability transition pore complex mitochondrial protein-containing complex protein-containing complex membrane protein complex pore complex nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR023614	Porin domain superfamily	Homologous Superfamily
A	IPR001925	Porin, eukaryotic type	Family
A	IPR027246	Eukaryotic porin/Tom40	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P21796	Psychomotor Disorders inborn mitochondrial myopathy myocardial infarction epilepsy ovarian cancer systemic lupus erythematosus allergic rhinitis diabetic kidney disease plasma cell myeloma astrocytic tumor breast cancer Hashimoto thyroiditis osteosarcoma rheumatoid arthritis hypothyroidism Psychomotor Disorders inborn mitochondrial myopathy myocardial infarction epilepsy ovarian cancer systemic lupus erythematosus allergic rhinitis diabetic kidney disease plasma cell myeloma astrocytic tumor breast cancer Hashimoto thyroiditis osteosarcoma rheumatoid arthritis hypothyroidism lung adenocarcinoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Beta-barrel transmembrane	Mitochondrial and plastid porins	Voltage-dependent anion channel (VDAC) porin (n=19,S=20)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Mitochondrial Outer Membrane Beta Barrel Proteins	VDAC-1 voltage dependent anion channel

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

2JK4 | pdb_00002jk4