2J9W
Structural insight into the ESCRT-I-II link and its role in MVB trafficking
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2j9wa1 | All alpha proteins | Four-helical up-and-down bundle | VPS28 C-terminal domain-like | automated matches | automated matches | AFRICAN CLAWED FROG (Xenopus laevis ) [TaxId: 8355 ], | SCOPe (2.08) |
A | d2j9wa2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | AFRICAN CLAWED FROG (Xenopus laevis ) [TaxId: 8355 ], | SCOPe (2.08) |
B | d2j9wb1 | All alpha proteins | Four-helical up-and-down bundle | VPS28 C-terminal domain-like | automated matches | automated matches | AFRICAN CLAWED FROG (Xenopus laevis ) [TaxId: 8355 ], | SCOPe (2.08) |
B | d2j9wb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | AFRICAN CLAWED FROG (Xenopus laevis ) [TaxId: 8355 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | VPS28 C-terminal domain-like | 8084192 | 4001213 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | VPS28 C-terminal domain-like | 8084193 | 3001082 | SCOP2 (2021-05-27) |
B | SCOP2B Superfamily | VPS28 C-terminal domain-like | 8084193 | 3001082 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03997 | e2j9wA1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: VPS28 C-terminal domain-like (From Topology) | T: VPS28 C-terminal domain-like | F: PF03997 | ECOD (1.6) |
B | PF03997 | e2j9wB1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: VPS28 C-terminal domain-like (From Topology) | T: VPS28 C-terminal domain-like | F: PF03997 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.1130 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Vps28 C-terminal domain | CATH (4.3.0) |
B | 1.20.120.1130 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Vps28 C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03997 | VPS28 protein (VPS28) | VPS28 protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037206 | VPS28, C-terminal domain superfamily | Homologous Superfamily | |
IPR017898 | Vacuolar protein sorting-associated, VPS28, N-terminal | Domain | |
IPR007143 | Vacuolar protein sorting-associated Vps28 | Family | |
IPR038358 | VPS28, N-terminal domain superfamily | Homologous Superfamily | |
IPR037202 | ESCRT assembly domain | Homologous Superfamily | |
IPR017899 | Vacuolar protein sorting-associated, VPS28, C-terminal | Domain |