Annotations: 2J8A

X-ray structure of the N-terminus RRM domain of Set1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cystatin	e2j8aA1	A: alpha arrays	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cystatin	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.330	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RRM (RNA recognition motif) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21569	Histone-lysine N-methyltransferase, RNA-binding domain (SET1_RBD)	Histone-lysine N-methyltransferase, RNA-binding domain	This domain is found in Histone-lysine N-methyltransferase, H3 lysine -4 specific from Saccharomyces cerevisiae (SET1) and similar proteins predominantly from yeast. SET1 is the methyltransferase subunit of the COMPASS (Set1C) complex that plays a ro ...	This domain is found in Histone-lysine N-methyltransferase, H3 lysine -4 specific from Saccharomyces cerevisiae (SET1) and similar proteins predominantly from yeast. SET1 is the methyltransferase subunit of the COMPASS (Set1C) complex that plays a role in telomere length maintenance and transcription elongation regulation [1]. This entry represents the RNA-binding domain (RBD), which shows an alpha-beta structure.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-4 SPECIFIC	protein-lysine N-methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups lysine N-methyltransferase activity protein methyltransferase activity N-methyltransferase activity transferase activity methyltransferase activity catalytic activity S-adenosylmethionine-dependent methyltransferase activity RNA binding binding nucleic acid binding histone H3 methyltransferase activity protein-lysine N-methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups lysine N-methyltransferase activity protein methyltransferase activity N-methyltransferase activity transferase activity methyltransferase activity catalytic activity S-adenosylmethionine-dependent methyltransferase activity RNA binding binding nucleic acid binding histone H3 methyltransferase activity histone methyltransferase activity histone H3K4 methyltransferase activity histone modifying activity histone H3K4 trimethyltransferase activity	positive regulation of organelle organization meiotic chromosome segregation regulation of cellular process regulation of reproductive process cellular component biogenesis cellular component assembly cell cycle synaptonemal complex organization chromosome segregation regulation of biological process positive regulation of synaptonemal complex assembly regulation of cell cycle process meiotic cell cycle regulation of chromosome organization positive regulation of organelle organization meiotic chromosome segregation regulation of cellular process regulation of reproductive process cellular component biogenesis cellular component assembly cell cycle synaptonemal complex organization chromosome segregation regulation of biological process positive regulation of synaptonemal complex assembly regulation of cell cycle process meiotic cell cycle regulation of chromosome organization regulation of organelle organization positive regulation of chromosome organization chromosome organization involved in meiotic cell cycle meiosis I cell cycle process homologous chromosome pairing at meiosis homologous chromosome segregation regulation of cellular component organization positive regulation of cellular component organization sexual reproduction reproductive process positive regulation of biological process synaptonemal complex assembly meiotic cell cycle process regulation of synaptonemal complex assembly cellular component organization meiosis I positive regulation of cell cycle process meiotic nuclear division cellular component organization or biogenesis regulation of cell cycle positive regulation of cellular process cell cycle process positive regulation of reproductive process positive regulation of cellular component biogenesis organelle fission biological regulation chromosome organization regulation of cellular component biogenesis positive regulation of cell cycle organelle organization nuclear division nuclear chromosome segregation cellular process regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of meiotic DNA double-strand break formation regulation of nucleobase-containing compound metabolic process primary metabolic process regulation of macromolecule metabolic process DNA metabolic process nucleic acid metabolic process meiotic DNA double-strand break formation metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process negative regulation of biological process chromatin organization negative regulation of cellular process chromatin remodeling negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process heterochromatin organization gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression constitutive heterochromatin formation biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process silent mating-type cassette heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process regulation of chromatin organization telomere organization telomere maintenance cellular response to stimulus cellular response to stress response to stimulus response to stress subtelomeric heterochromatin formation protein methylation macromolecule methylation protein alkylation methylation macromolecule modification protein metabolic process protein modification process developmental process sexual sporulation resulting in formation of a cellular spore cellular developmental process reproductive process in single-celled organism cell development developmental process involved in reproduction sporulation resulting in formation of a cellular spore anatomical structure morphogenesis ascospore formation sexual sporulation cell differentiation anatomical structure formation involved in morphogenesis anatomical structure development sporulation RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process regulation of DNA-templated transcription sterol homeostasis chemical homeostasis homeostatic process lipid homeostasis negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of RNA metabolic process nucleolar chromatin organization rDNA heterochromatin formation nucleus organization nucleolus organization facultative heterochromatin formation positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle methyltransferase complex nuclear lumen membraneless organelle intracellular membraneless organelle chromosome chromosome, telomeric region chromosomal region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR024636	Histone lysine methyltransferase SET associated	Domain
A	IPR048669	Histone-lysine N-methyltransferase SET1, RNA-binding domain	Domain
A	IPR046341	SET domain superfamily	Homologous Superfamily
A	IPR001214	SET domain	Domain
A	IPR003616	Post-SET domain	Domain
A	IPR024657	COMPASS complex Set1 subunit, N-SET domain	Domain
A	IPR044570	Histone-lysine N-methyltransferase Set1-like	Family
A	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A	IPR017111	Histone-lysine N-methyltransferase Set1, fungi	Family