Annotations: 2J4T

Biological and Structural Features of Murine Angiogenin-4, an Angiogenic Protein

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Ribonuclease A-like	8069370	4000894	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RNase A-like	8069371	3001918	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	RNase A-like	8069371	3001918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cyt-b5	e2j4tA1	A: a/b three-layered sandwiches	X: Profilin-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Cyt-b5	ECOD (v294.1)
B	HTHP	e2j4tB1	A: a/b three-layered sandwiches	X: HTH	H: Nudix	T: Nudix	F: HTHP	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.130.10	Alpha Beta	Roll	P-30 Protein	Ribonuclease A-like domain	CATH (4.3.0)
B	3.10.130.10	Alpha Beta	Roll	P-30 Protein	Ribonuclease A-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00074	Pancreatic ribonuclease (RnaseA)	Pancreatic ribonuclease	Ribonucleases. Members include pancreatic RNAase A and angiogenins. Structure is an alpha+beta fold -- long curved beta sheet and three helices.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	ANGIOGENIN-4	binding nucleic acid binding hydrolase activity catalytic activity cation binding transition metal ion binding copper ion binding ion binding metal ion binding small molecule binding tRNA-specific ribonuclease activity nuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid binding nucleic acid binding hydrolase activity catalytic activity cation binding transition metal ion binding copper ion binding ion binding metal ion binding small molecule binding tRNA-specific ribonuclease activity nuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity, acting on a tRNA endonuclease activity protein binding signaling receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity identical protein binding protein homodimerization activity protein dimerization activity cytoskeletal protein binding actin binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding peptide binding heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding	developmental process stem cell proliferation cell population proliferation cellular developmental process hemopoiesis cell differentiation anatomical structure development hematopoietic stem cell proliferation cell development cellular process biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to yeast developmental process stem cell proliferation cell population proliferation cellular developmental process hemopoiesis cell differentiation anatomical structure development hematopoietic stem cell proliferation cell development cellular process biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to yeast response to external stimulus response to fungus response to external biotic stimulus response to biotic stimulus humoral immune response defense response immune response antibacterial humoral response defense response to symbiont antimicrobial humoral response defense response to bacterium defense response to other organism response to stress immune system process response to bacterium innate immune response cell migration cell motility RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process rRNA transcription metabolic process macromolecule metabolic process rRNA metabolic process response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus cellular component biogenesis cellular component organization organelle organization cellular component assembly stress granule assembly organelle assembly membraneless organelle assembly cellular component organization or biogenesis response to hormone response to endogenous stimulus response to chemical regulation of cellular process negative regulation of biological process negative regulation of tRNA metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality tRNA decay RNA catabolic process regulation of biological process negative regulation of metabolic process nucleobase-containing compound catabolic process tRNA metabolic process regulation of gene expression tRNA stabilization regulation of tRNA metabolic process nucleic acid catabolic process regulation of macromolecule biosynthetic process regulation of metabolic process negative regulation of RNA metabolic process negative regulation of tRNA catabolic process catabolic process macromolecule catabolic process regulation of tRNA stability negative regulation of cellular process negative regulation of macromolecule metabolic process negative regulation of catabolic process regulation of biosynthetic process biological regulation negative regulation of RNA catabolic process regulation of macromolecule metabolic process regulation of catabolic process RNA stabilization regulation of tRNA catabolic process regulation of RNA stability localization import into cell transport receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport defense response to fungus antifungal humoral response multicellular organismal process blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development system development negative regulation of cell population proliferation regulation of smooth muscle cell proliferation smooth muscle cell proliferation negative regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation cellular response to stimulus negative regulation of translation in response to stress protein biosynthetic process negative regulation of translation regulation of translation in response to stress cellular response to stress protein metabolic process negative regulation of protein metabolic process regulation of protein metabolic process translation negative regulation of gene expression negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process signaling signal transduction cell communication positive regulation of cell population proliferation positive regulation of biological process positive regulation of cellular process regulation of localization establishment of protein localization regulation of protein localization positive regulation of establishment of protein localization positive regulation of secretion by cell protein localization to extracellular region positive regulation of protein transport regulation of secretion by cell secretion by cell positive regulation of secretion intracellular protein localization regulation of transport secretion regulation of establishment of protein localization establishment of protein localization to extracellular region export from cell regulation of protein transport protein secretion positive regulation of protein secretion regulation of protein secretion regulation of secretion positive regulation of transport protein transport macromolecule localization positive regulation of protein localization cytoplasmic translation antimicrobial humoral immune response mediated by antimicrobial peptide positive regulation of phosphorylation positive regulation of phosphorus metabolic process phosphorylation positive regulation of phosphate metabolic process positive regulation of metabolic process phosphate-containing compound metabolic process regulation of phosphorus metabolic process regulation of phosphorylation phosphorus metabolic process endothelial cell proliferation positive regulation of epithelial cell proliferation regulation of endothelial cell proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation defense response to Gram-positive bacterium	basement membrane extracellular matrix cellular anatomical structure external encapsulating structure extracellular region intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton membrane-bounded organelle intracellular vesicle basement membrane extracellular matrix cellular anatomical structure external encapsulating structure extracellular region intracellular organelle intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle secretory granule secretory vesicle cytoplasm vesicle endocytic vesicle chromosome nucleus membrane-enclosed lumen nucleolus intracellular organelle lumen organelle lumen nuclear lumen cytoplasmic ribonucleoprotein granule ribonucleoprotein granule supramolecular complex cytoplasmic stress granule protein-containing complex extracellular protein-containing complex angiogenin-PRI complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036816	Ribonuclease A-like domain superfamily	Homologous Superfamily
A, B	IPR001427	Pancreatic ribonuclease	Family
A, B	IPR023411	Ribonuclease A, active site	Active Site
A, B	IPR023412	Ribonuclease A-domain	Domain

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.