2J0T
Crystal Structure of the Catalytic Domain of MMP-1 in Complex with the Inhibitory Domain of TIMP-1
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8039035 | 3001975 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8039035 | 3001975 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8039035 | 3001975 | SCOP2B (2022-06-29) |
D | SCOP2 Family | Tissue inhibitor of metalloproteinases, TIMP | 8030576 | 4001872 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | TIMP-like | 8042955 | 3000488 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | TIMP-like | 8042955 | 3000488 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | TIMP-like | 8042955 | 3000488 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Peptidase_M10 | e2j0tB1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M10 | ECOD (1.6) |
C | Peptidase_M10 | e2j0tC1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M10 | ECOD (1.6) |
A | Peptidase_M10 | e2j0tA1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M10 | ECOD (1.6) |
D | TIMP | e2j0tD1 | A: beta barrels | X: OB-fold | H: TIMP-like (From Topology) | T: TIMP-like | F: TIMP | ECOD (1.6) |
F | TIMP | e2j0tF1 | A: beta barrels | X: OB-fold | H: TIMP-like (From Topology) | T: TIMP-like | F: TIMP | ECOD (1.6) |
E | TIMP | e2j0tE1 | A: beta barrels | X: OB-fold | H: TIMP-like (From Topology) | T: TIMP-like | F: TIMP | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Collagenase (Catalytic Domain) | CATH (4.3.0) |
C | 3.40.390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Collagenase (Catalytic Domain) | CATH (4.3.0) |
A | 3.40.390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Collagenase (Catalytic Domain) | Collagenase (Catalytic Domain) | CATH (4.3.0) |
D | 2.40.50.120 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
F | 2.40.50.120 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) | |
E | 2.40.50.120 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00413 | Matrixin (Peptidase_M10) | Matrixin | The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. | Domain | |
PF00965 | Tissue inhibitor of metalloproteinase (TIMP) | Tissue inhibitor of metalloproteinase | Members of this family are common in extracellular regions of vertebrate species | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018486 | Hemopexin, conserved site | Conserved Site | |
IPR036375 | Hemopexin-like domain superfamily | Homologous Superfamily | |
IPR021158 | Peptidase M10A, cysteine switch, zinc binding site | Binding Site | |
IPR036365 | PGBD-like superfamily | Homologous Superfamily | |
IPR001818 | Peptidase M10, metallopeptidase | Domain | |
IPR021190 | Peptidase M10A | Family | |
IPR002477 | Peptidoglycan binding-like | Domain | |
IPR006026 | Peptidase, metallopeptidase | Domain | |
IPR024079 | Metallopeptidase, catalytic domain superfamily | Homologous Superfamily | |
IPR018487 | Hemopexin-like repeats | Repeat | |
IPR000585 | Hemopexin-like domain | Domain | |
IPR033739 | Peptidase M10A, catalytic domain | Domain | |
IPR001820 | Protease inhibitor I35 (TIMP) | Family | |
IPR027465 | Proteinase inhibitor I35b (TIMP), C-terminal | Homologous Superfamily | |
IPR001134 | Netrin domain | Domain | |
IPR008993 | Tissue inhibitor of metalloproteinases-like, OB-fold | Homologous Superfamily | |
IPR030490 | Tissue inhibitor of metalloproteinase, conserved site | Conserved Site |