2J07
Thermus DNA photolyase with 8-HDF antenna chromophore
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2j07a1 | All alpha proteins | Cryptochrome/photolyase FAD-binding domain | Cryptochrome/photolyase FAD-binding domain | Cryptochrome/photolyase FAD-binding domain | C-terminal domain of DNA photolyase | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
A | d2j07a2 | Alpha and beta proteins (a/b) | Cryptochrome/photolyase, N-terminal domain | Cryptochrome/photolyase, N-terminal domain | Cryptochrome/photolyase, N-terminal domain | DNA photolyase | (Thermus thermophilus HB8 ) [TaxId: 300852 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Cryptochrome/photolyase FAD-binding domain | 8030562 | 4001154 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Cryptochrome/photolyase, N-terminal domain | 8030564 | 4003847 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Cryptochrome/photolyase FAD-binding domain | 8042941 | 3000930 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Cryptochrome/photolyase, N-terminal domain | 8042943 | 3001644 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | FAD_binding_7 | e2j07A1 | A: alpha complex topology | X: Cryptochrome/photolyase FAD-binding domain-related (From Homology) | H: Cryptochrome/photolyase FAD-binding domain-related | T: Cryptochrome/photolyase FAD-binding domain | F: FAD_binding_7 | ECOD (1.6) |
A | DNA_photolyase | e2j07A2 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: DNA_photolyase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
A | 1.25.40.80 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
A | 1.10.579.10 | Mainly Alpha | Orthogonal Bundle | DNA Cyclobutane Dipyrimidine Photolyase, subunit A | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00875 | DNA photolyase (DNA_photolyase) | DNA photolyase | This domain binds a light harvesting cofactor. | Domain | |
PF03441 | FAD binding domain of DNA photolyase (FAD_binding_7) | FAD binding domain of DNA photolyase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002081 | Cryptochrome/DNA photolyase class 1 | Family | |
IPR036134 | Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily | Homologous Superfamily | |
IPR018394 | Cryptochrome/DNA photolyase class 1, conserved site, C-terminal | Conserved Site | |
IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily | |
IPR036155 | Cryptochrome/photolyase, N-terminal domain superfamily | Homologous Superfamily | |
IPR006050 | DNA photolyase, N-terminal | Domain | |
IPR005101 | Cryptochrome/DNA photolyase, FAD-binding domain | Domain |