Crystal structure of metalloprotein yiiX from Escherichia coli O157:H7, DUF1105
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d2if6b_ | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | YiiX-like | Hypothetical protein YiiX | (Escherichia coli O157:H7 ) [TaxId: 83334 ], | SCOPe (2.08) |
| A | d2if6a1 | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | YiiX-like | Hypothetical protein YiiX | (Escherichia coli O157:H7 ) [TaxId: 83334 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | RNA_pol_Rpb2_2 | e2if6B1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RNA_pol_Rpb2_2 | ECOD (v295.2) |
| A | Peptidase_C92 | e2if6A1 | A: few secondary structure elements | X: Cysteine proteinases-like | H: Cysteine proteinases | T: Cysteine proteinases | F: Peptidase_C92 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.90.1720.10 | Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) | CATH (4.3.0) |
| A | 3.90.1720.10 | Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | endopeptidase domain like (from Nostoc punctiforme) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF05708 | Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family (Peptidase_C92) | Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family | - | Family |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
| IPR024453 | Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family | Family |