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 2I9F | pdb_00002i9f

Structure of the equine arterivirus nucleocapsid protein

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd2i9fd2 Alpha and beta proteins (a+b) Nucleocapsid protein dimerization domain Nucleocapsid protein dimerization domain Arterivirus nucleocapsid protein Arterivirus nucleocapsid protein (Equine arteritis virus ) [TaxId: 11047 ], SCOPe (2.08)
Dd2i9fd3 Artifacts Tags Tags Tags N-terminal Tags (Equine arteritis virus ) [TaxId: 11047 ], SCOPe (2.08)
Cd2i9fc_ Alpha and beta proteins (a+b) Nucleocapsid protein dimerization domain Nucleocapsid protein dimerization domain Arterivirus nucleocapsid protein Arterivirus nucleocapsid protein (Equine arteritis virus ) [TaxId: 11047 ], SCOPe (2.08)
Bd2i9fb2 Alpha and beta proteins (a+b) Nucleocapsid protein dimerization domain Nucleocapsid protein dimerization domain Arterivirus nucleocapsid protein Arterivirus nucleocapsid protein (Equine arteritis virus ) [TaxId: 11047 ], SCOPe (2.08)
Bd2i9fb3 Artifacts Tags Tags Tags N-terminal Tags (Equine arteritis virus ) [TaxId: 11047 ], SCOPe (2.08)
Ad2i9fa1 Alpha and beta proteins (a+b) Nucleocapsid protein dimerization domain Nucleocapsid protein dimerization domain Arterivirus nucleocapsid protein Arterivirus nucleocapsid protein (Equine arteritis virus ) [TaxId: 11047 ], SCOPe (2.08)
Ad2i9fa2 Artifacts Tags Tags Tags N-terminal Tags (Equine arteritis virus ) [TaxId: 11047 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyNucleocapsid protein dimerization domain 8034433 3001606 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyNucleocapsid protein dimerization domain 8034433 3001606 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyNucleocapsid protein dimerization domain 8034433 3001606 SCOP2B (2022-06-29)
ASCOP2 FamilyArterivirus nucleocapsid protein 8022053 4001449 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyNucleocapsid protein dimerization domain 8034433 3001606 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DThaumatine2i9fD1 A: alpha arraysX: Ntn/PP2CH: NtnT: Penicillin acylase, catalytic domainF: ThaumatinECOD (v295.2)
CThaumatine2i9fC1 A: alpha arraysX: Ntn/PP2CH: NtnT: Penicillin acylase, catalytic domainF: ThaumatinECOD (v295.2)
BArteri_nucleoe2i9fB1 A: alpha arraysX: Arterivirus nucleocapsid proteinH: Arterivirus nucleocapsid proteinT: Arterivirus nucleocapsid proteinF: Arteri_nucleoECOD (v295.2)
AArteri_nucleoe2i9fA1 A: alpha arraysX: Arterivirus nucleocapsid proteinH: Arterivirus nucleocapsid proteinT: Arterivirus nucleocapsid proteinF: Arteri_nucleoECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D6.10.140.90 Special Helix non-globular Helix Hairpins CATH (4.3.0)
C6.10.140.90 Special Helix non-globular Helix Hairpins CATH (4.3.0)
B6.10.140.90 Special Helix non-globular Helix Hairpins CATH (4.3.0)
A6.10.140.90 Special Helix non-globular Helix Hairpins CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF01481Arterivirus nucleocapsid protein (Arteri_nucleo)Arterivirus nucleocapsid protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Nucleocapsid -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR002484Arterivirus nucleocapsidFamily
A, B, C, D
IPR037179Nucleocapsid protein, C-terminalHomologous Superfamily