2H2E
Structure of Rubisco LSMT bound to AzaAdoMet and Lysine
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RuBisCo LSMT C-terminal, substrate-binding domain | 8042117 | 3001192 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | SET domain | 8042118 | 3000162 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RuBisCo LSMT C-terminal, substrate-binding domain | 8042117 | 3001192 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | SET domain | 8042118 | 3000162 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | SET domain | 8042118 | 3000162 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RuBisCo LSMT C-terminal, substrate-binding domain | 8042117 | 3001192 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e2h2eA1 | A: beta barrels | X: beta-clip | H: SET domain-like (From Topology) | T: SET domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF09273 | e2h2eA2 | A: a+b complex topology | X: RuBisCo LSMT C-terminal, substrate-binding domain (From Topology) | H: RuBisCo LSMT C-terminal, substrate-binding domain (From Topology) | T: RuBisCo LSMT C-terminal, substrate-binding domain | F: PF09273 | ECOD (1.6) |
B | F_UNCLASSIFIED | e2h2eB1 | A: beta barrels | X: beta-clip | H: SET domain-like (From Topology) | T: SET domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF09273 | e2h2eB2 | A: a+b complex topology | X: RuBisCo LSMT C-terminal, substrate-binding domain (From Topology) | H: RuBisCo LSMT C-terminal, substrate-binding domain (From Topology) | T: RuBisCo LSMT C-terminal, substrate-binding domain | F: PF09273 | ECOD (1.6) |
C | F_UNCLASSIFIED | e2h2eC1 | A: beta barrels | X: beta-clip | H: SET domain-like (From Topology) | T: SET domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF09273 | e2h2eC2 | A: a+b complex topology | X: RuBisCo LSMT C-terminal, substrate-binding domain (From Topology) | H: RuBisCo LSMT C-terminal, substrate-binding domain (From Topology) | T: RuBisCo LSMT C-terminal, substrate-binding domain | F: PF09273 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.1410.10 | Alpha Beta | Alpha-Beta Complex | set domain protein methyltransferase, domain 1 | set domain protein methyltransferase, domain 1 | CATH (4.3.0) |
A | 3.90.1420.10 | Alpha Beta | Alpha-Beta Complex | set domain protein methyltransferase, domain 2 | Rubisco LSMT, substrate-binding domain | CATH (4.3.0) |
B | 3.90.1410.10 | Alpha Beta | Alpha-Beta Complex | set domain protein methyltransferase, domain 1 | set domain protein methyltransferase, domain 1 | CATH (4.3.0) |
B | 3.90.1420.10 | Alpha Beta | Alpha-Beta Complex | set domain protein methyltransferase, domain 2 | Rubisco LSMT, substrate-binding domain | CATH (4.3.0) |
C | 3.90.1410.10 | Alpha Beta | Alpha-Beta Complex | set domain protein methyltransferase, domain 1 | set domain protein methyltransferase, domain 1 | CATH (4.3.0) |
C | 3.90.1420.10 | Alpha Beta | Alpha-Beta Complex | set domain protein methyltransferase, domain 2 | Rubisco LSMT, substrate-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09273 | Rubisco LSMT substrate-binding (Rubis-subs-bind) | Rubisco LSMT substrate-binding | Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco ho ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase |
|
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050600 | SETD3/SETD6 methyltransferase | Family | |
IPR036464 | Rubisco LSMT, substrate-binding domain superfamily | Homologous Superfamily | |
IPR046341 | SET domain superfamily | Homologous Superfamily | |
IPR011192 | Rubisco LSMT methyltransferase, plant | Family | |
IPR015353 | Rubisco LSMT, substrate-binding domain | Domain | |
IPR001214 | SET domain | Domain | |
IPR044431 | RBCMT, SET domain | Domain |