2GM4 | pdb_00002gm4

An activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNA

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
H [auth B]d2gm4b1 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like Recombinase DNA-binding domain gamma,delta resolvase (C-terminal domain) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
H [auth B]d2gm4b2 Alpha and beta proteins (a/b) Resolvase-like Resolvase-like gamma,delta resolvase, catalytic domain gamma,delta resolvase, catalytic domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
G [auth A]d2gm4a1 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like Recombinase DNA-binding domain gamma,delta resolvase (C-terminal domain) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
G [auth A]d2gm4a2 Alpha and beta proteins (a/b) Resolvase-like Resolvase-like gamma,delta resolvase, catalytic domain gamma,delta resolvase, catalytic domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth B]SCOP2B SuperfamilyResolvase-like 8003596 3000065 SCOP2B (2022-06-29)
H [auth B]SCOP2B SuperfamilyHomeodomain-like 8017624 3000001 SCOP2B (2022-06-29)
G [auth A]SCOP2B SuperfamilyResolvase-like 8003596 3000065 SCOP2B (2022-06-29)
G [auth A]SCOP2B SuperfamilyHomeodomain-like 8017624 3000001 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth B]GTP_EFTU, MMR_HSR1e2gm4B1 A: alpha arraysX: Fusion glycoprotein F2H: Fusion glycoprotein F2T: Fusion glycoprotein F2F: GTP_EFTU, MMR_HSR1ECOD (v295.2)
G [auth A]GTP_EFTU, MMR_HSR1e2gm4A1 A: alpha arraysX: Fusion glycoprotein F2H: Fusion glycoprotein F2T: Fusion glycoprotein F2F: GTP_EFTU, MMR_HSR1ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H [auth B]3.40.50.1390 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Resolvase, N-terminal catalytic domainCATH (4.3.0)
H [auth B]6.10.250.10 Special Helix non-globular Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
H [auth B]1.10.10.60 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Homeodomain-likeCATH (4.3.0)
G [auth A]3.40.50.1390 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Resolvase, N-terminal catalytic domainCATH (4.3.0)
G [auth A]6.10.250.10 Special Helix non-globular Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
G [auth A]1.10.10.60 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Homeodomain-likeCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth A],
H [auth B]		Transposon gamma-delta resolvase - -
C [auth Y],
F [auth K]		5'-D(*TP*TP*AP*TP*CP*GP*GP*AP*CP*AP*CP*TP*G)-3'---
A [auth X],
B [auth Z],
D [auth J],
E [auth I]		5'-D(*CP*AP*GP*TP*GP*TP*CP*CP*GP*AP*TP*AP*AP*TP*TP*TP*AP*TP*AP*AP*A)-3'---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth A],
H [auth B]		IPR009057Homeodomain-like superfamilyHomologous Superfamily
G [auth A],
H [auth B]		IPR036162Resolvase-like, N-terminal catalytic domain superfamilyHomologous Superfamily
G [auth A],
H [auth B]		IPR006118Recombinase, conserved siteConserved Site
G [auth A],
H [auth B]		IPR006119Resolvase, N-terminal catalytic domainDomain
G [auth A],
H [auth B]		IPR006120Resolvase, HTH domainDomain
G [auth A],
H [auth B]		IPR050639Site-specific recombinase resolvaseFamily