2G6V
The crystal structure of ribD from Escherichia coli
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2g6va2 | Alpha and beta proteins (a/b) | Dihydrofolate reductase-like | Dihydrofolate reductase-like | automated matches | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d2g6va1 | Alpha and beta proteins (a/b) | Cytidine deaminase-like | Cytidine deaminase-like | automated matches | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d2g6va3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d2g6vb2 | Alpha and beta proteins (a/b) | Dihydrofolate reductase-like | Dihydrofolate reductase-like | automated matches | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d2g6vb1 | Alpha and beta proteins (a/b) | Cytidine deaminase-like | Cytidine deaminase-like | automated matches | automated matches | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d2g6vb3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | dCMP_cyt_deam_1 | e2g6vA2 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: dCMP_cyt_deam_1 | ECOD (1.6) |
A | RibD_C | e2g6vA1 | A: a/b three-layered sandwiches | X: Dihydrofolate reductases (From Topology) | H: Dihydrofolate reductases (From Topology) | T: Dihydrofolate reductases | F: RibD_C | ECOD (1.6) |
B | dCMP_cyt_deam_1 | e2g6vB3 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: dCMP_cyt_deam_1 | ECOD (1.6) |
B | RibD_C | e2g6vB4 | A: a/b three-layered sandwiches | X: Dihydrofolate reductases (From Topology) | H: Dihydrofolate reductases (From Topology) | T: Dihydrofolate reductases | F: RibD_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.140.10 | Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase | domain 2 | CATH (4.3.0) |
A | 3.40.430.10 | Alpha Beta | 3-Layer(aba) Sandwich | Dihydrofolate Reductase, subunit A | Dihydrofolate Reductase, subunit A | CATH (4.3.0) |
B | 3.40.140.10 | Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase | domain 2 | CATH (4.3.0) |
B | 3.40.430.10 | Alpha Beta | 3-Layer(aba) Sandwich | Dihydrofolate Reductase, subunit A | Dihydrofolate Reductase, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00383 | Cytidine and deoxycytidylate deaminase zinc-binding region (dCMP_cyt_deam_1) | Cytidine and deoxycytidylate deaminase zinc-binding region | - | Domain | |
PF01872 | RibD C-terminal domain (RibD_C) | RibD C-terminal domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050765 | Riboflavin Biosynthesis HTP Reductase | Family | |
IPR016193 | Cytidine deaminase-like | Homologous Superfamily | |
IPR024072 | Dihydrofolate reductase-like domain superfamily | Homologous Superfamily | |
IPR011549 | Riboflavin-specific deaminase, C-terminal | Domain | |
IPR004794 | Riboflavin biosynthesis protein RibD | Family | |
IPR002125 | Cytidine and deoxycytidylate deaminase domain | Domain | |
IPR002734 | Bacterial bifunctional deaminase-reductase, C-terminal | Domain | |
IPR016192 | APOBEC/CMP deaminase, zinc-binding | Binding Site |