2FUT
Crystal Structure of Heparinase II Complexed with a Disaccharide Product
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Chondroitin AC/alginate lyase | 8090361 | 3001005 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Galactose mutarotase-like | 8090362 | 3000035 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8090364 | 3001528 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8090364 | 3001528 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Galactose mutarotase-like | 8090362 | 3000035 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Chondroitin AC/alginate lyase | 8090361 | 3001005 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF07810 | e2futA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: EUF07810 | ECOD (1.6) |
A | Hepar_II_III | e2futA2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Hepar_II_III | ECOD (1.6) |
A | Alginate_lyase_1 | e2futA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Alginate_lyase_1 | ECOD (1.6) |
B | EUF07810 | e2futB1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: EUF07810 | ECOD (1.6) |
B | Hepar_II_III | e2futB2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Hepar_II_III | ECOD (1.6) |
B | Alginate_lyase_1 | e2futB3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Alginate_lyase_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.50.10.100 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Chondroitin AC/alginate lyase | CATH (4.3.0) |
A | 2.70.98.70 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
A | 2.60.40.2750 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B | 1.50.10.100 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Chondroitin AC/alginate lyase | CATH (4.3.0) |
B | 2.70.98.70 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
B | 2.60.40.2750 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18675 | Heparinase II C-terminal domain (HepII_C) | Heparinase II C-terminal domain | Heparinase II (HepII) is an 85-kDa dimeric enzyme that depolymerizes both heparin and heparan sulfate glycosaminoglycans [1]. The protein is composed of three domains: an N-terminal alpha-helical domain, a central two-layered beta-sheet domain, and a ... | Domain | |
PF16332 | Domain of unknown function (DUF4962) (DUF4962) | Domain of unknown function (DUF4962) | - | Repeat | |
PF07940 | Heparinase II/III-like protein (Hepar_II_III) | Heparinase II/III-like protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032518 | Heparinase II, N-terminal | Domain | |
IPR008929 | Chondroitin AC/alginate lyase | Homologous Superfamily | |
IPR040925 | Heparinase II, C-terminal | Domain | |
IPR012480 | Heparinase II/III-like, C-terminal | Domain |