2FRP | pdb_00002frp

Bacteriophage HK97 Expansion Intermediate IV

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d2frpe1	Alpha and beta proteins (a+b)	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	(Byrnievirus HK97 ) [TaxId: 37554 ],	SCOPe (2.08)
D	d2frpd1	Alpha and beta proteins (a+b)	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	(Byrnievirus HK97 ) [TaxId: 37554 ],	SCOPe (2.08)
C	d2frpc1	Alpha and beta proteins (a+b)	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	(Byrnievirus HK97 ) [TaxId: 37554 ],	SCOPe (2.08)
B	d2frpb1	Alpha and beta proteins (a+b)	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	(Byrnievirus HK97 ) [TaxId: 37554 ],	SCOPe (2.08)
A	d2frpa1	Alpha and beta proteins (a+b)	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	Major capsid protein gp5	(Byrnievirus HK97 ) [TaxId: 37554 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Phage coat protein-like	8041290	3001529	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	HORMA	e2frpG3	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: HORMA	ECOD (develop294)
F	Hepar_II_III	e2frpF1	A: alpha bundles	X: HTH	H: Nudix	T: winged helix domain	F: Hepar_II_III	ECOD (develop294)
E	ECH_1	e2frpE1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: ECH_1	ECOD (develop294)
D	ECH_1	e2frpD1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: ECH_1	ECOD (develop294)
C	ECH_1	e2frpC1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: ECH_1	ECOD (develop294)
B	ECH_1	e2frpB1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: ECH_1	ECOD (develop294)
A	ECH_1	e2frpA1	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: ECH_1	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF05065	Phage capsid family (Phage_capsid)	Phage capsid family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	Major capsid protein	identical protein binding protein binding binding	virus maturation viral life cycle viral capsid assembly viral procapsid maturation cellular component biogenesis cellular component organization virion assembly cellular component assembly viral process cellular process cellular component organization or biogenesis	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR054612	Phage capsid-like, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR024455	Phage capsid	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.