2FK3
Structure of the Alzheimer's Amyloid Precursor Protein (APP) Copper Binding Domain in 'large unit cell' form
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Amyloid beta a4 protein copper binding domain (domain 2) | 8041099 | 3000618 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Amyloid beta a4 protein copper binding domain (domain 2) | 8041099 | 3000618 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Amyloid beta a4 protein copper binding domain (domain 2) | 8041099 | 3000618 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Amyloid beta a4 protein copper binding domain (domain 2) | 8041099 | 3000618 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Amyloid beta a4 protein copper binding domain (domain 2) | 8041099 | 3000618 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Amyloid beta a4 protein copper binding domain (domain 2) | 8041099 | 3000618 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Amyloid beta a4 protein copper binding domain (domain 2) | 8041099 | 3000618 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Amyloid beta a4 protein copper binding domain (domain 2) | 8041099 | 3000618 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | APP_Cu_bd | e2fk3C1 | A: a+b two layers | X: Dodecin subunit-like | H: Amyloid beta a4 protein copper binding domain (domain 2) (From Topology) | T: Amyloid beta a4 protein copper binding domain (domain 2) | F: APP_Cu_bd | ECOD (1.6) |
F | APP_Cu_bd | e2fk3F1 | A: a+b two layers | X: Dodecin subunit-like | H: Amyloid beta a4 protein copper binding domain (domain 2) (From Topology) | T: Amyloid beta a4 protein copper binding domain (domain 2) | F: APP_Cu_bd | ECOD (1.6) |
A | APP_Cu_bd | e2fk3A1 | A: a+b two layers | X: Dodecin subunit-like | H: Amyloid beta a4 protein copper binding domain (domain 2) (From Topology) | T: Amyloid beta a4 protein copper binding domain (domain 2) | F: APP_Cu_bd | ECOD (1.6) |
B | APP_Cu_bd | e2fk3B1 | A: a+b two layers | X: Dodecin subunit-like | H: Amyloid beta a4 protein copper binding domain (domain 2) (From Topology) | T: Amyloid beta a4 protein copper binding domain (domain 2) | F: APP_Cu_bd | ECOD (1.6) |
D | APP_Cu_bd | e2fk3D1 | A: a+b two layers | X: Dodecin subunit-like | H: Amyloid beta a4 protein copper binding domain (domain 2) (From Topology) | T: Amyloid beta a4 protein copper binding domain (domain 2) | F: APP_Cu_bd | ECOD (1.6) |
E | APP_Cu_bd | e2fk3E1 | A: a+b two layers | X: Dodecin subunit-like | H: Amyloid beta a4 protein copper binding domain (domain 2) (From Topology) | T: Amyloid beta a4 protein copper binding domain (domain 2) | F: APP_Cu_bd | ECOD (1.6) |
G | APP_Cu_bd | e2fk3G1 | A: a+b two layers | X: Dodecin subunit-like | H: Amyloid beta a4 protein copper binding domain (domain 2) (From Topology) | T: Amyloid beta a4 protein copper binding domain (domain 2) | F: APP_Cu_bd | ECOD (1.6) |
H | APP_Cu_bd | e2fk3H1 | A: a+b two layers | X: Dodecin subunit-like | H: Amyloid beta a4 protein copper binding domain (domain 2) (From Topology) | T: Amyloid beta a4 protein copper binding domain (domain 2) | F: APP_Cu_bd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 3.30.1490.140 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
F | 3.30.1490.140 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
A | 3.30.1490.140 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
B | 3.30.1490.140 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
D | 3.30.1490.140 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
E | 3.30.1490.140 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
G | 3.30.1490.140 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
H | 3.30.1490.140 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12924 | Copper-binding of amyloid precursor, CuBD (APP_Cu_bd) | Copper-binding of amyloid precursor, CuBD | This short domain, part of the extra-cellular N-terminus of the amyloid precursor protein, APP, can bind both copper and zinc, CuBD. The structure of Cu2+-bound CuBD reveals that the metal ligands are His147, His151, Tyr168 and two water molecules, ... | Domain |