2EY4
Crystal Structure of a Cbf5-Nop10-Gar1 Complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | PUA domain | 8027950 | 4003536 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Pseudouridine synthase II TruB | 8027951 | 4003455 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PUA domain-like | 8040329 | 3001015 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Pseudouridine synthase | 8040330 | 3001360 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | PUA domain-like | 8040329 | 3001015 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Pseudouridine synthase | 8040330 | 3001360 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Gar1-like SnoRNP | 8027952 | 4001829 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Translational proteins | 8040331 | 3000811 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Translational proteins | 8040331 | 3000811 | SCOP2B (2022-06-29) |
E | SCOP2 Family | Nucleolar RNA-binding protein Nop10-like | 8027953 | 4000515 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | Nop10-like SnoRNP Znf-like | 8040332 | 3000486 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | Nop10-like SnoRNP Znf-like | 8040332 | 3000486 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01472 | e2ey4A1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF01472 | ECOD (1.6) |
A | PF01509,PF08068,PF16198 | e2ey4A2 | A: a+b two layers | X: Alpha-beta plaits | H: Pseudouridine synthase (From Topology) | T: Pseudouridine synthase | F: PF01509,PF08068,PF16198 | ECOD (1.6) |
B | PF01472 | e2ey4B1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF01472 | ECOD (1.6) |
B | PF01509,PF08068,PF16198 | e2ey4B2 | A: a+b two layers | X: Alpha-beta plaits | H: Pseudouridine synthase (From Topology) | T: Pseudouridine synthase | F: PF01509,PF08068,PF16198 | ECOD (1.6) |
C | PF04410 | e2ey4C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF04410 | ECOD (1.6) |
D | PF04410 | e2ey4D1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF04410 | ECOD (1.6) |
E | PF04135 | e2ey4E1 | A: few secondary structure elements | X: Rubredoxin-like | H: Nucleolar RNA-binding protein Nop10-like (From Topology) | T: Nucleolar RNA-binding protein Nop10-like | F: PF04135 | ECOD (1.6) |
F | PF04135 | e2ey4F1 | A: few secondary structure elements | X: Rubredoxin-like | H: Nucleolar RNA-binding protein Nop10-like (From Topology) | T: Nucleolar RNA-binding protein Nop10-like | F: PF04135 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.130.10 | Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase | Chain: A, domain 4 | CATH (4.3.0) |
A | 3.30.2350.10 | Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | Pseudouridine synthase | CATH (4.3.0) |
B | 2.30.130.10 | Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase | Chain: A, domain 4 | CATH (4.3.0) |
B | 3.30.2350.10 | Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | Pseudouridine synthase | CATH (4.3.0) |
C | 2.40.10.230 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Probable tRNA pseudouridine synthase domain | CATH (4.3.0) |
D | 2.40.10.230 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Probable tRNA pseudouridine synthase domain | CATH (4.3.0) |
E | 2.20.28.40 | Mainly Beta | Single Sheet | Rubrerythrin, domain 2 | H/ACA ribonucleoprotein complex, subunit Nop10 | CATH (4.3.0) |
F | 2.20.28.40 | Mainly Beta | Single Sheet | Rubrerythrin, domain 2 | H/ACA ribonucleoprotein complex, subunit Nop10 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08068 | DKCLD (NUC011) domain (DKCLD) | DKCLD (NUC011) domain | This is a TruB_N/PUA domain associated N-terminal domain of Dyskerin-like proteins [1]. | Domain | |
PF16198 | tRNA pseudouridylate synthase B C-terminal domain (TruB_C_2) | tRNA pseudouridylate synthase B C-terminal domain | - | Family | |
PF01509 | TruB family pseudouridylate synthase (N terminal domain) (TruB_N) | TruB family pseudouridylate synthase (N terminal domain) | - | Family | |
PF01472 | PUA domain (PUA) | PUA domain | - | Family | |
PF04410 | Gar1/Naf1 RNA binding region (Gar1) | Gar1/Naf1 RNA binding region | Gar1 is a small nucleolar RNP that is required for pre-mRNA processing and pseudouridylation [1]. It is co-immunoprecipitated with the H/ACA families of snoRNAs. This family represents the conserved central region of Gar1. This region is necessary an ... | Domain | |