2EX3 | pdb_00002ex3

Bacteriophage phi29 DNA polymerase bound to terminal protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d2ex3l1	All alpha proteins	DNA terminal protein	DNA terminal protein	DNA terminal protein	DNA terminal protein	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
J	d2ex3j1	All alpha proteins	DNA terminal protein	DNA terminal protein	DNA terminal protein	DNA terminal protein	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
H	d2ex3h1	All alpha proteins	DNA terminal protein	DNA terminal protein	DNA terminal protein	DNA terminal protein	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
F	d2ex3f1	All alpha proteins	DNA terminal protein	DNA terminal protein	DNA terminal protein	DNA terminal protein	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
D	d2ex3d1	All alpha proteins	DNA terminal protein	DNA terminal protein	DNA terminal protein	DNA terminal protein	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
B	d2ex3b1	All alpha proteins	DNA terminal protein	DNA terminal protein	DNA terminal protein	DNA terminal protein	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
K	d2ex3k1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Ribonuclease H-like	DnaQ-like 3'-5' exonuclease	Exonuclease domain of phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
K	d2ex3k2	Multi-domain proteins (alpha and beta)	DNA/RNA polymerases	DNA/RNA polymerases	DNA polymerase I	phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
I	d2ex3i1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Ribonuclease H-like	DnaQ-like 3'-5' exonuclease	Exonuclease domain of phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
I	d2ex3i2	Multi-domain proteins (alpha and beta)	DNA/RNA polymerases	DNA/RNA polymerases	DNA polymerase I	phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
G	d2ex3g1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Ribonuclease H-like	DnaQ-like 3'-5' exonuclease	Exonuclease domain of phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
G	d2ex3g2	Multi-domain proteins (alpha and beta)	DNA/RNA polymerases	DNA/RNA polymerases	DNA polymerase I	phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
E	d2ex3e1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Ribonuclease H-like	DnaQ-like 3'-5' exonuclease	Exonuclease domain of phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
E	d2ex3e2	Multi-domain proteins (alpha and beta)	DNA/RNA polymerases	DNA/RNA polymerases	DNA polymerase I	phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
C	d2ex3c1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Ribonuclease H-like	DnaQ-like 3'-5' exonuclease	Exonuclease domain of phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
C	d2ex3c2	Multi-domain proteins (alpha and beta)	DNA/RNA polymerases	DNA/RNA polymerases	DNA polymerase I	phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
A	d2ex3a1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Ribonuclease H-like	DnaQ-like 3'-5' exonuclease	Exonuclease domain of phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
A	d2ex3a2	Multi-domain proteins (alpha and beta)	DNA/RNA polymerases	DNA/RNA polymerases	DNA polymerase I	phi29 DNA polymerase	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Phi-29 phage GP3-like	8040263	3001904	SCOP2B (2022-06-29)
J	SCOP2 Family	Phi-29 phage GP3-like	8027884	4001586	SCOP2 (2022-06-29)
J	SCOP2 Superfamily	Phi-29 phage GP3-like	8040263	3001904	SCOP2 (2022-06-29)
H	SCOP2B Superfamily	Phi-29 phage GP3-like	8040263	3001904	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Phi-29 phage GP3-like	8040263	3001904	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phi-29 phage GP3-like	8040263	3001904	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phi-29 phage GP3-like	8040263	3001904	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ribonuclease H-like	8036150	3000143	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ribonuclease H-like	8036150	3000143	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ribonuclease H-like	8036150	3000143	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ribonuclease H-like	8036150	3000143	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ribonuclease H-like	8036150	3000143	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ribonuclease H-like	8036150	3000143	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Nucleotide cyclase/DNA polymerase palm domain-like	8036151	3001272	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Evr1_Alr	e2ex3L1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Evr1_Alr	ECOD (v295.2)
L	Gag_p24_C	e2ex3L2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Gag_p24_C	ECOD (v295.2)
J	Evr1_Alr	e2ex3J1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Evr1_Alr	ECOD (v295.2)
J	Gag_p24_C	e2ex3J2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Gag_p24_C	ECOD (v295.2)
H	Evr1_Alr	e2ex3H1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Evr1_Alr	ECOD (v295.2)
H	Gag_p24_C	e2ex3H2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Gag_p24_C	ECOD (v295.2)
F	Evr1_Alr	e2ex3F1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Evr1_Alr	ECOD (v295.2)
F	Gag_p24_C	e2ex3F2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Gag_p24_C	ECOD (v295.2)
D	Evr1_Alr	e2ex3D1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Evr1_Alr	ECOD (v295.2)
D	Gag_p24_C	e2ex3D2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Gag_p24_C	ECOD (v295.2)
B	Phi-29_GP3	e2ex3B1	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: DNA terminal protein N-terminal subdomain	T: DNA terminal protein N-terminal subdomain	F: Phi-29_GP3	ECOD (v295.2)
B	Phi-29_GP3	e2ex3B2	A: alpha bundles	X: DNA terminal protein C-terminal domain	H: DNA terminal protein C-terminal domain	T: DNA terminal protein C-terminal domain	F: Phi-29_GP3	ECOD (v295.2)
K	Cation_efflux	e2ex3K1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
K	Fer4,DUF3470	e2ex3K2	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Fer4,DUF3470	ECOD (v295.2)
K	IGFBP	e2ex3K3	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: IGFBP	ECOD (v295.2)
K	Hexokinase_2	e2ex3K4	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: Hexokinase_2	ECOD (v295.2)
I	Cation_efflux	e2ex3I1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
I	Fer4,DUF3470	e2ex3I2	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Fer4,DUF3470	ECOD (v295.2)
I	IGFBP	e2ex3I3	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: IGFBP	ECOD (v295.2)
I	Hexokinase_2	e2ex3I4	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: Hexokinase_2	ECOD (v295.2)
G	Cation_efflux	e2ex3G1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
G	Fer4,DUF3470	e2ex3G2	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Fer4,DUF3470	ECOD (v295.2)
G	IGFBP	e2ex3G3	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: IGFBP	ECOD (v295.2)
G	Hexokinase_2	e2ex3G4	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: Hexokinase_2	ECOD (v295.2)
E	Cation_efflux	e2ex3E1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
E	Fer4,DUF3470	e2ex3E2	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Fer4,DUF3470	ECOD (v295.2)
E	IGFBP	e2ex3E3	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: IGFBP	ECOD (v295.2)
E	Hexokinase_2	e2ex3E4	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: Hexokinase_2	ECOD (v295.2)
C	Cation_efflux	e2ex3C1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
C	Fer4,DUF3470	e2ex3C2	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Fer4,DUF3470	ECOD (v295.2)
C	IGFBP	e2ex3C3	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: IGFBP	ECOD (v295.2)
C	Hexokinase_2	e2ex3C4	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: Hexokinase_2	ECOD (v295.2)
A	Cation_efflux	e2ex3A1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
A	Fer4,DUF3470	e2ex3A2	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: Fer4,DUF3470	ECOD (v295.2)
A	IGFBP	e2ex3A3	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: IGFBP	ECOD (v295.2)
A	Hexokinase_2	e2ex3A4	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: Hexokinase_2	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	6.10.250.960	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
L	1.20.1270.230	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)
J	6.10.250.960	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
J	1.20.1270.230	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)
H	6.10.250.960	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
H	1.20.1270.230	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)
F	6.10.250.960	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
F	1.20.1270.230	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)
D	6.10.250.960	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
D	1.20.1270.230	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)
B	6.10.250.960	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.1270.230	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)
K	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
K	3.90.1600.10	Alpha Beta	Alpha-Beta Complex	Palm domain of DNA polymerase	B family DNA polymerase, palm domain	CATH (4.3.0)
K	3.30.1770.10	Alpha Beta	2-Layer Sandwich	TPR 1 domain of DNA polymerase	TPR 1 domain of DNA polymerase	CATH (4.3.0)
K	1.10.287.690	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	B family DNA polymerase, finger domain	CATH (4.3.0)
K	4.10.80.20	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)
K	4.10.80.30	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)
I	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
I	3.90.1600.10	Alpha Beta	Alpha-Beta Complex	Palm domain of DNA polymerase	B family DNA polymerase, palm domain	CATH (4.3.0)
I	3.30.1770.10	Alpha Beta	2-Layer Sandwich	TPR 1 domain of DNA polymerase	TPR 1 domain of DNA polymerase	CATH (4.3.0)
I	1.10.287.690	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	B family DNA polymerase, finger domain	CATH (4.3.0)
I	4.10.80.20	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)
I	4.10.80.30	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)
G	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
G	3.90.1600.10	Alpha Beta	Alpha-Beta Complex	Palm domain of DNA polymerase	B family DNA polymerase, palm domain	CATH (4.3.0)
G	3.30.1770.10	Alpha Beta	2-Layer Sandwich	TPR 1 domain of DNA polymerase	TPR 1 domain of DNA polymerase	CATH (4.3.0)
G	1.10.287.690	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	B family DNA polymerase, finger domain	CATH (4.3.0)
G	4.10.80.20	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)
G	4.10.80.30	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)
E	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
E	3.90.1600.10	Alpha Beta	Alpha-Beta Complex	Palm domain of DNA polymerase	B family DNA polymerase, palm domain	CATH (4.3.0)
E	3.30.1770.10	Alpha Beta	2-Layer Sandwich	TPR 1 domain of DNA polymerase	TPR 1 domain of DNA polymerase	CATH (4.3.0)
E	1.10.287.690	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	B family DNA polymerase, finger domain	CATH (4.3.0)
E	4.10.80.20	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)
E	4.10.80.30	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)
C	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
C	3.90.1600.10	Alpha Beta	Alpha-Beta Complex	Palm domain of DNA polymerase	B family DNA polymerase, palm domain	CATH (4.3.0)
C	3.30.1770.10	Alpha Beta	2-Layer Sandwich	TPR 1 domain of DNA polymerase	TPR 1 domain of DNA polymerase	CATH (4.3.0)
C	1.10.287.690	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	B family DNA polymerase, finger domain	CATH (4.3.0)
C	4.10.80.20	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)
C	4.10.80.30	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)
A	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
A	3.90.1600.10	Alpha Beta	Alpha-Beta Complex	Palm domain of DNA polymerase	B family DNA polymerase, palm domain	CATH (4.3.0)
A	3.30.1770.10	Alpha Beta	2-Layer Sandwich	TPR 1 domain of DNA polymerase	TPR 1 domain of DNA polymerase	CATH (4.3.0)
A	1.10.287.690	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	B family DNA polymerase, finger domain	CATH (4.3.0)
A	4.10.80.20	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)
A	4.10.80.30	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	DNA polymerase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L	PF05435	Phi-29 DNA terminal protein GP3 (Phi-29_GP3)	Phi-29 DNA terminal protein GP3	-	Family
A, C, E, G, I A, C, E, G, I, K	PF03175	DNA polymerase type B, organellar and viral (DNA_pol_B_2)	DNA polymerase type B, organellar and viral	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L	DNA terminal protein	DNA binding binding nucleic acid binding hydrolase activity catalytic activity	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan symbiont entry into host cell virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont-mediated disruption of host anatomical structure biological process involved in interspecies interaction between organisms symbiont-mediated disruption of host cell wall symbiont-mediated disruption of host cell envelope symbiont-mediated disruption of host cellular anatomical structure biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell via disruption of host cell wall peptidoglycan symbiont entry into host cell symbiont entry into host disruption of anatomical structure in another organism viral DNA genome replication primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process viral genome replication metabolic process cellular process macromolecule metabolic process DNA biosynthetic process DNA-templated DNA replication DNA replication, synthesis of primer RNA metabolic process RNA biosynthetic process DNA replication symbiont entry into host cell via disruption of host cell envelope	viral terminase complex protein-containing complex host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A, C, E, G, I A, C, E, G, I, K	DNA polymerase	catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups hydrolase activity, acting on ester bonds nuclease activity hydrolase activity exonuclease activity DNA binding binding catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups hydrolase activity, acting on ester bonds nuclease activity hydrolase activity exonuclease activity DNA binding binding nucleic acid binding nucleoside binding heterocyclic compound binding carbohydrate derivative binding small molecule binding nucleoside phosphate binding nucleotide binding cation binding ion binding metal ion binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process viral DNA genome replication viral life cycle nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid biosynthetic process biosynthetic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process viral DNA genome replication viral life cycle nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid biosynthetic process biosynthetic process viral genome replication viral process DNA biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L	IPR043124	DNA terminal protein Gp3, C-terminal	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR037216	DNA terminal protein Gp3 superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L	IPR008770	DNA terminal protein Gp3	Family
A, C, E, G, I A, C, E, G, I, K	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR006172	DNA-directed DNA polymerase, family B	Family
A, C, E, G, I A, C, E, G, I, K	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR014416	DNA-directed DNA polymerase, family B, phi29-like virus	Family
A, C, E, G, I A, C, E, G, I, K	IPR017964	DNA-directed DNA polymerase, family B, conserved site	Conserved Site
A, C, E, G, I A, C, E, G, I, K	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR004868	DNA-directed DNA polymerase, family B, mitochondria/virus	Domain
A, C, E, G, I A, C, E, G, I, K	IPR023211	DNA polymerase, palm domain superfamily	Homologous Superfamily