Annotations: 2EMS

Crystal Structure Analysis of the radixin FERM domain complexed with adhesion molecule CD43

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2emsa1	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	Second domain of FERM	Radixin	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d2emsa2	All beta proteins	PH domain-like barrel	PH domain-like	Third domain of FERM	Radixin	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d2emsa3	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	First domain of FERM	Radixin	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d2emsa4	Artifacts	Tags	Tags	Tags	C-terminal Tags	mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ubiquitin-like	8038750	3000157	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	FERM central domain-like	8038749	3001227	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PH domain-like	8038751	3000134	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rhv	e2emsA1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Rhv	ECOD (v295.2)
A	Cation_efflux	e2emsA2	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
A	HSP90,HATPase_c_3	e2emsA3	A: alpha arrays	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: HSP90,HATPase_c_3	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
A	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF09379	FERM N-terminal domain (FERM_N)	FERM N-terminal domain	This domain is the N-terminal ubiquitin-like structural domain of the FERM domain.	Domain
A	PF09380	FERM C-terminal PH-like domain (FERM_C)	FERM C-terminal PH-like domain		Domain
A	PF00373	FERM central domain (FERM_M)	FERM central domain	This domain is the central structural domain of the FERM domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Leukosialin	protein binding binding protein domain specific binding heat shock protein binding Hsp70 protein binding protein-folding chaperone binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity	leukocyte tethering or rolling leukocyte cell-cell adhesion leukocyte migration cell adhesion cell-cell adhesion immune system process leukocyte adhesion to vascular endothelial cell cellular extravasation cell migration cellular process cell motility developmental process thymic T cell selection multicellular organismal process leukocyte tethering or rolling leukocyte cell-cell adhesion leukocyte migration cell adhesion cell-cell adhesion immune system process leukocyte adhesion to vascular endothelial cell cellular extravasation cell migration cellular process cell motility developmental process thymic T cell selection multicellular organismal process cellular developmental process hemopoiesis cell activation cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation leukocyte activation T cell differentiation in thymus T cell activation cell differentiation negative thymic T cell selection anatomical structure development T cell differentiation negative T cell selection T cell selection leukocyte differentiation biological process involved in interspecies interaction between organisms response to stimulus response to protozoan response to other organism response to external stimulus response to external biotic stimulus response to biotic stimulus adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity regulation of immune effector process regulation of acute inflammatory response to antigenic stimulus T cell mediated immunity negative regulation of biological process negative regulation of lymphocyte mediated immunity inflammatory response to antigenic stimulus leukocyte mediated immunity regulation of immune system process negative regulation of inflammatory response to antigenic stimulus regulation of T cell mediated immunity regulation of biological process hypersensitivity immune response regulation of adaptive immune response negative regulation of immune response negative regulation of immune effector process regulation of inflammatory response negative regulation of adaptive immune response immune effector process negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains negative regulation of hypersensitivity regulation of leukocyte mediated immunity regulation of response to stimulus negative regulation of response to external stimulus negative regulation of defense response regulation of immune response regulation of acute inflammatory response inflammatory response negative regulation of T cell mediated immunity regulation of defense response negative regulation of type IV hypersensitivity negative regulation of acute inflammatory response regulation of response to external stimulus negative regulation of inflammatory response negative regulation of acute inflammatory response to antigenic stimulus regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains response to stress regulation of response to stress regulation of type IV hypersensitivity acute inflammatory response regulation of hypersensitivity defense response negative regulation of response to stimulus regulation of inflammatory response to antigenic stimulus type IV hypersensitivity biological regulation acute inflammatory response to antigenic stimulus adaptive immune response regulation of lymphocyte mediated immunity negative regulation of immune system process negative regulation of leukocyte mediated immunity negative regulation of lymphocyte proliferation regulation of cellular process regulation of leukocyte activation regulation of cell activation negative regulation of T cell proliferation negative regulation of cell adhesion negative regulation of leukocyte proliferation lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion regulation of cell population proliferation mononuclear cell proliferation negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of multicellular organismal process negative regulation of leukocyte activation negative regulation of lymphocyte activation leukocyte proliferation negative regulation of mononuclear cell proliferation negative regulation of cellular process regulation of multicellular organismal process regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation negative regulation of cell population proliferation regulation of cell adhesion regulation of T cell activation negative regulation of cell activation regulation of T cell proliferation regulation of mononuclear cell proliferation regulation of lymphocyte activation defense response to bacterium response to bacterium regulation of response to biotic stimulus regulation of defense response to virus defense response to virus response to virus regulation of cell motility regulation of leukocyte migration lymphocyte migration regulation of lymphocyte migration regulation of locomotion regulation of T cell migration mononuclear cell migration regulation of cell migration T cell migration regulation of mononuclear cell migration locomotion cellular response to stimulus cell surface receptor signaling pathway signaling signal transduction cell communication positive regulation of locomotion positive regulation of biological process positive regulation of cell migration positive regulation of cell motility positive regulation of mononuclear cell migration positive regulation of immune system process positive regulation of cellular process positive regulation of lymphocyte migration positive regulation of T cell migration positive regulation of leukocyte migration CD4-positive or CD8-positive, alpha-beta T cell lineage commitment T-helper 1 cell lineage commitment cell activation involved in immune response CD4-positive, alpha-beta T cell differentiation alpha-beta T cell differentiation T cell activation involved in immune response alpha-beta T cell activation involved in immune response CD4-positive, alpha-beta T cell activation leukocyte activation involved in immune response alpha-beta T cell activation CD4-positive, alpha-beta T cell lineage commitment lymphocyte activation involved in immune response T-helper cell differentiation alpha-beta T cell lineage commitment T cell differentiation involved in immune response T-helper 1 type immune response T-helper cell lineage commitment T cell lineage commitment positive T cell selection T-helper 1 cell differentiation cell fate commitment cell death apoptotic signaling pathway apoptotic process programmed cell death positive regulation of phosphorylation regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of phosphate metabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of protein phosphorylation protein modification process protein phosphorylation phosphorylation regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule modification metabolic process regulation of phosphorylation macromolecule metabolic process regulation of metabolic process positive regulation of leukocyte cell-cell adhesion positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation positive regulation of leukocyte activation positive regulation of T cell activation positive regulation of cell adhesion lymphocyte costimulation positive regulation of multicellular organismal process T cell costimulation regulation of tumor necrosis factor production positive regulation of macromolecule biosynthetic process positive regulation of tumor necrosis factor superfamily cytokine production positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of biosynthetic process tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production gene expression macromolecule biosynthetic process tumor necrosis factor production regulation of gene expression regulation of tumor necrosis factor superfamily cytokine production biosynthetic process positive regulation of gene expression regulation of macromolecule biosynthetic process positive regulation of cytokine production positive regulation of cell population proliferation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation positive regulation of leukocyte proliferation positive regulation of mononuclear cell proliferation	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane basement membrane extracellular matrix external encapsulating structure extracellular region cell division site cleavage furrow plasma membrane region cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane basement membrane extracellular matrix external encapsulating structure extracellular region cell division site cleavage furrow plasma membrane region cell projection uropod plasma membrane bounded cell projection cell trailing edge intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton intracellular organelle actin-based cell projection cytoskeleton organelle membraneless organelle microvillus membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen PML body nuclear lumen
A	Radixin	protein kinase A binding protein binding binding ATPase binding enzyme binding protein domain specific binding cell adhesion molecule binding cytoskeletal protein binding actin binding	regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process regulation of cellular component organization organelle assembly regulation of cellular component biogenesis regulation of organelle organization cellular component biogenesis cellular component organization organelle organization cellular component assembly regulation of organelle assembly cellular component organization or biogenesis localization protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane regulation of cell cycle phase transition cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition mitotic cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of cell cycle process positive regulation of mitotic cell cycle cell cycle regulation of cell cycle cell cycle process positive regulation of G1/S transition of mitotic cell cycle regulation of cell cycle process positive regulation of cell cycle regulation of mitotic cell cycle phase transition positive regulation of cell cycle G1/S phase transition mitotic cell cycle process regulation of G1/S transition of mitotic cell cycle positive regulation of cell cycle phase transition G1/S transition of mitotic cell cycle mitotic cell cycle phase transition plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly microvillus organization microvillus assembly cell projection assembly cellular response to stimulus response to thyroid hormone response to stimulus response to endogenous stimulus cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical cellular response to thyroid hormone stimulus cellular response to hormone stimulus regulation of localization regulation of postsynaptic neurotransmitter receptor diffusion trapping neurotransmitter receptor diffusion trapping regulation of postsynaptic membrane neurotransmitter receptor levels regulation of cellular localization receptor diffusion trapping regulation of biological quality receptor localization to synapse postsynaptic neurotransmitter receptor diffusion trapping regulation of receptor localization to synapse adherens junction organization regulation of adherens junction organization cell junction organization cell-cell junction organization regulation of cellular component size negative regulation of biological process protein-containing complex disassembly regulation of protein-containing complex disassembly actin filament depolymerization regulation of actin filament depolymerization actin filament capping actin filament-based process negative regulation of supramolecular fiber organization negative regulation of actin filament polymerization cellular component disassembly barbed-end actin filament capping negative regulation of cellular component organization actin filament organization negative regulation of protein depolymerization negative regulation of protein-containing complex assembly regulation of protein polymerization regulation of supramolecular fiber organization supramolecular fiber organization regulation of cytoskeleton organization regulation of actin filament-based process regulation of protein-containing complex assembly negative regulation of protein-containing complex disassembly negative regulation of cellular process protein-containing complex assembly negative regulation of protein polymerization regulation of actin filament polymerization actin polymerization or depolymerization protein polymerization regulation of actin filament organization actin cytoskeleton organization actin filament polymerization protein-containing complex organization regulation of protein depolymerization negative regulation of cytoskeleton organization regulation of actin polymerization or depolymerization negative regulation of organelle organization regulation of actin filament length regulation of actin cytoskeleton organization negative regulation of actin filament depolymerization protein depolymerization cytoskeleton organization regulation of anatomical structure size apical protein localization establishment of protein localization establishment of localization regulation of signaling small GTPase-mediated signal transduction signaling regulation of small GTPase mediated signal transduction regulation of signal transduction regulation of Rap protein signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette regulation of cell communication signal transduction Rap protein signal transduction catabolic process positive regulation of protein metabolic process macromolecule catabolic process regulation of primary metabolic process protein metabolic process regulation of protein metabolic process primary metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of protein catabolic process positive regulation of protein localization to early endosome regulation of protein localization protein localization to endosome protein localization to early endosome regulation of protein localization to endosome protein localization to organelle positive regulation of protein localization positive regulation of protein localization to endosome regulation of protein localization to early endosome developmental process regulation of developmental process regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of anatomical structure morphogenesis epithelium development endothelial cell differentiation cellular developmental process endothelium development cell development tissue development epithelial cell differentiation endothelial cell development epithelial cell development cell differentiation establishment of endothelial barrier animal gross anatomical part developmental process establishment of protein localization to membrane establishment of protein localization to plasma membrane positive regulation of early endosome to late endosome transport transport vesicle-mediated transport establishment of localization in cell positive regulation of intracellular transport regulation of intracellular transport regulation of transport intracellular transport regulation of vesicle-mediated transport endosomal transport vesicle-mediated transport between endosomal compartments regulation of early endosome to late endosome transport early endosome to late endosome transport positive regulation of transport	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell periphery sarcolemma plasma membrane membrane T-tubule apical part of cell stereocilium base intracellular anatomical structure stereocilium bundle cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell periphery sarcolemma plasma membrane membrane T-tubule apical part of cell stereocilium base intracellular anatomical structure stereocilium bundle intracellular membraneless organelle neuron projection actin cytoskeleton cluster of actin-based cell projections intracellular organelle stereocilium actin-based cell projection cytoskeleton organelle membraneless organelle cytoplasm cytosol cell-cell junction adherens junction anchoring junction cell junction ruffle microvillus filopodium midbody cell tip cell pole focal adhesion cell-substrate junction myelin sheath plasma membrane region apical plasma membrane cell division site cleavage furrow cell cortex cortical cytoskeleton cortical actin cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR038829	Leukosialin	Family
A	IPR000299	FERM domain	Domain
A	IPR019748	FERM central domain	Domain
A	IPR018980	FERM, C-terminal PH-like domain	Domain
A	IPR000798	Ezrin/radixin/moesin-like	Family
A	IPR008954	Moesin tail domain superfamily	Homologous Superfamily
A	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A	IPR011259	Ezrin/radixin/moesin, C-terminal	Domain
A	IPR019747	FERM conserved site	Conserved Site
A	IPR018979	FERM, N-terminal	Domain
A	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A	IPR041789	ERM family, FERM domain C-lobe	Domain
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR046810	Ezrin/radixin/moesin, alpha-helical domain	Domain
A	IPR019749	Band 4.1 domain	Domain
A	IPR011174	Ezrin/radixin/moesin	Family
A	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily

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