2DX5
The complex structure between the mouse EAP45-GLUE domain and ubiquitin
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2dx5a1 | All beta proteins | PH domain-like barrel | PH domain-like | VPS36 N-terminal domain-like | Vacuolar protein sorting protein 36, VPS36 | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B | d2dx5b1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | Ubiquitin | (Bos taurus ) [TaxId: 9913 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Vps36_ESCRT-II | e2dx5A1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: Vps36_ESCRT-II | ECOD (1.6) |
B | ubiquitin_1 | e2dx5B1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
B | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR040608 | Snf8/Vps36 family | Family | |
IPR011993 | PH-like domain superfamily | Homologous Superfamily | |
IPR021648 | Vacuolar protein sorting protein 36, GLUE domain | Domain | |
IPR037855 | Vacuolar protein sorting protein 36 | Family | |
IPR019956 | Ubiquitin domain | Domain | |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR050158 | Ubiquitin and ubiquitin-like | Family | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR000626 | Ubiquitin-like domain | Domain |