Annotations: 2CSB

Crystal structure of Topoisomerase V from Methanopyrus kandleri (61 kDa fragment)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2csbb2	All alpha proteins	SAM domain-like	RuvA domain 2-like	Topoisomerase V repeat domain	Topoisomerase V	(Methanopyrus kandleri ) [TaxId: 2320 ],	SCOPe (2.08)
B	d2csbb1	All alpha proteins	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like	Topoisomerase V, catalytic domain	(Methanopyrus kandleri ) [TaxId: 2320 ],	SCOPe (2.08)
A	d2csba1	All alpha proteins	SAM domain-like	RuvA domain 2-like	Topoisomerase V repeat domain	Topoisomerase V	(Methanopyrus kandleri ) [TaxId: 2320 ],	SCOPe (2.08)
A	d2csba5	All alpha proteins	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like	Topoisomerase V, catalytic domain	(Methanopyrus kandleri ) [TaxId: 2320 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Helix-hairpin-helix tandem	8039247	3000163	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Helix-hairpin-helix tandem	8039249	3000163	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Topoisomerase V catalytic domain-like	8039252	3001992	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Helix-hairpin-helix tandem	8039248	3000163	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Helix-hairpin-helix tandem	8039251	3000163	SCOP2B (2022-06-29)
A	SCOP2 Family	Topoisomerase V repeat domain	8026868	4001369	SCOP2 (2022-06-29)
A	SCOP2 Family	Topoisomerase V repeat domain	8026869	4001369	SCOP2 (2022-06-29)
A	SCOP2 Family	Topoisomerase V repeat domain	8026870	4001369	SCOP2 (2022-06-29)
A	SCOP2 Family	Topoisomerase V repeat domain	8026872	4001369	SCOP2 (2022-06-29)
A	SCOP2 Family	Topoisomerase V catalytic domain-like	8026873	4001615	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Helix-hairpin-helix tandem	8039247	3000163	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Helix-hairpin-helix tandem	8039248	3000163	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Helix-hairpin-helix tandem	8039249	3000163	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Helix-hairpin-helix tandem	8039251	3000163	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Topoisomerase V catalytic domain-like	8039252	3001992	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	MATH_2	e2csbB1	A: alpha arrays	X: HTH	H: HTH	T: tetra-helical, lambda repressor-like	F: MATH_2	ECOD (v295.2)
A	HTH_AsnC-type	e2csbA1	A: alpha arrays	X: HMG-box-like	H: HTH	T: Three-helical HTH	F: HTH_AsnC-type	ECOD (v295.2)
A	Topo-V_HhH_2_2nd	e2csbA2	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: Topo-V_HhH_2_2nd	ECOD (v295.2)
A	HHH_5	e2csbA3	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: HHH_5	ECOD (v295.2)
A		e2csbA6	A: alpha bundles	X: Topoisomerase V catalytic domain-like	H: Topoisomerase V catalytic domain-like	T: Topoisomerase V catalytic domain-like	F:	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	6.10.250.950	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
A	6.10.250.950	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Topoisomerase V	DNA binding binding nucleic acid binding	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR049334	Topoisomerase V, second (HhH)2 tandem domain	Domain
A, B	IPR010994	RuvA domain 2-like	Homologous Superfamily
A, B	IPR024065	DNA topoisomerase V, catalytic domain superfamily	Homologous Superfamily
A, B	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR060101	SAM-like helix-hairpin-helix tandem	Domain
A, B	IPR055246	Topoisomerase V, HHH domain	Domain
A, B	IPR003583	Helix-hairpin-helix DNA-binding motif, class 1	Domain
A, B	IPR054066	SAM domain-like	Domain