2AKI
Normal mode-based flexible fitted coordinates of a translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth X] | SCOP2 Family | Preprotein translocase, SecG subunit -like | 8044987 | 4004237 | SCOP2 (2022-06-29) |
A [auth X] | SCOP2 Superfamily | Preprotein translocase subunit SecG-like | 8053307 | 3002175 | SCOP2 (2022-06-29) |
D [auth A] | SCOP2B Superfamily | Preprotein translocase subunit SecG-like | 8053307 | 3002175 | SCOP2B (2022-06-29) |
C [auth Z] | SCOP2B Superfamily | Protein translocase subunit SecE-like | 8053308 | 3002174 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | Protein translocase subunit SecE-like | 8053308 | 3002174 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth X] | SecG | e2akiX1 | A: alpha bundles | X: Protein-export membrane protein secG (From Topology) | H: Protein-export membrane protein secG (From Topology) | T: Protein-export membrane protein secG | F: SecG | ECOD (1.6) |
D [auth A] | SecG | e2akiA1 | A: alpha bundles | X: Protein-export membrane protein secG (From Topology) | H: Protein-export membrane protein secG (From Topology) | T: Protein-export membrane protein secG | F: SecG | ECOD (1.6) |
B [auth Y] | SecY | e2akiY1 | A: alpha complex topology | X: Preprotein translocase SecY subunit (From Topology) | H: Preprotein translocase SecY subunit (From Topology) | T: Preprotein translocase SecY subunit | F: SecY | ECOD (1.6) |
E [auth B] | SecY | e2akiB1 | A: alpha complex topology | X: Preprotein translocase SecY subunit (From Topology) | H: Preprotein translocase SecY subunit (From Topology) | T: Preprotein translocase SecY subunit | F: SecY | ECOD (1.6) |
C [auth Z] | SecE | e2akiZ1 | A: extended segments | X: Preprotein translocase SecE subunit (From Topology) | H: Preprotein translocase SecE subunit (From Topology) | T: Preprotein translocase SecE subunit | F: SecE | ECOD (1.6) |
F [auth C] | SecE | e2akiC1 | A: extended segments | X: Preprotein translocase SecE subunit (From Topology) | H: Preprotein translocase SecE subunit (From Topology) | T: Preprotein translocase SecE subunit | F: SecE | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth X], D [auth A] | PF03840 | Preprotein translocase SecG subunit (SecG) | Preprotein translocase SecG subunit | - | Family |
B [auth Y], E [auth B] | PF00344 | SecY (SecY) | SecY | - | Family |
C [auth Z], F [auth C] | PF00584 | SecE/Sec61-gamma subunits of protein translocation complex (SecE) | SecE/Sec61-gamma subunits of protein translocation complex | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth X], D [auth A] | IPR004692 | Preprotein translocase SecG subunit | Family |
B [auth Y], E [auth B] | IPR002208 | SecY/SEC61-alpha family | Family |
B [auth Y], E [auth B] | IPR030659 | SecY conserved site | Conserved Site |
B [auth Y], E [auth B] | IPR023201 | SecY domain superfamily | Homologous Superfamily |
B [auth Y], E [auth B] | IPR026593 | Protein translocase subunit SecY | Family |
C [auth Z], F [auth C] | IPR005807 | SecE subunit of protein translocation complex, bacterial-like | Family |
C [auth Z], F [auth C] | IPR038379 | SecE superfamily | Homologous Superfamily |
C [auth Z], F [auth C] | IPR001901 | Protein translocase complex, SecE/Sec61-gamma subunit | Family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |