Annotations: 21GM

The atomic coordinate of p24 complex at pH 7.5

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF01105	emp24/gp25L/p24 family/GOLD (EMP24_GP25L)	emp24/gp25L/p24 family/GOLD	Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in [2]. The GOLD domain is always ...	Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in [2]. The GOLD domain is always found combined with lipid- or membrane-association domains [2].	Domain
D	PF01105	emp24/gp25L/p24 family/GOLD (EMP24_GP25L)	emp24/gp25L/p24 family/GOLD	Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in [2]. The GOLD domain is always ...	Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in [2]. The GOLD domain is always found combined with lipid- or membrane-association domains [2].	Domain
C	PF01105	emp24/gp25L/p24 family/GOLD (EMP24_GP25L)	emp24/gp25L/p24 family/GOLD	Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in [2]. The GOLD domain is always ...	Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in [2]. The GOLD domain is always found combined with lipid- or membrane-association domains [2].	Domain
A	PF01105	emp24/gp25L/p24 family/GOLD (EMP24_GP25L)	emp24/gp25L/p24 family/GOLD	Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in [2]. The GOLD domain is always ...	Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in [2]. The GOLD domain is always found combined with lipid- or membrane-association domains [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Transmembrane emp24 domain-containing protein 2	protein binding binding signaling receptor binding G protein-coupled receptor binding frizzled binding smoothened binding	labyrinthine layer blood vessel development developmental process placenta blood vessel development multicellular organismal process placenta development chordate embryonic development animal organ development labyrinthine layer development embryo development in utero embryonic development vasculature development circulatory system development multicellular organism development embryonic placenta development embryo development ending in birth or egg hatching labyrinthine layer blood vessel development developmental process placenta blood vessel development multicellular organismal process placenta development chordate embryonic development animal organ development labyrinthine layer development embryo development in utero embryonic development vasculature development circulatory system development multicellular organism development embryonic placenta development embryo development ending in birth or egg hatching anatomical structure development embryonic organ development animal gross anatomical part developmental process blood vessel development system development vesicle budding from membrane cellular localization transport vesicle-mediated transport cellular component organization vesicle organization cellular component biogenesis localization cellular component assembly establishment of localization in cell protein-containing complex assembly cellular component organization or biogenesis membrane organization protein-containing complex organization intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport establishment of localization organelle organization cellular process COPII vesicle coat assembly COPII-coated vesicle budding Golgi vesicle transport vesicle coat assembly protein localization to cell periphery protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane regulation of localization regulation of cellular process vesicle cargo loading COPII-coated vesicle cargo loading regulation of intracellular transport regulation of biological process regulation of transport biological regulation regulation of cargo loading into COPII-coated vesicle regulation of cellular localization negative regulation of hydrolase activity negative regulation of GTPase activity regulation of catalytic activity negative regulation of molecular function negative regulation of biological process negative regulation of catalytic activity regulation of GTPase activity regulation of molecular function regulation of hydrolase activity anatomical structure morphogenesis embryonic morphogenesis multi-multicellular organism process reproductive process maternal process involved in female pregnancy multicellular organismal reproductive process developmental process involved in reproduction maternal placenta development female pregnancy multi-organism reproductive process establishment of protein localization protein transport intracellular protein transport Golgi vesicle budding COPI-coated vesicle budding COPI coating of Golgi vesicle Golgi transport vesicle coating Golgi organization endomembrane system organization	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure Golgi cisterna membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment Golgi cisterna intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle Golgi stack cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure Golgi cisterna membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment Golgi cisterna intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle Golgi stack cytoplasm organelle membrane intracellular vesicle COPII-coated ER to Golgi transport vesicle cytoplasmic vesicle coated vesicle vesicle transport vesicle endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane COPI-coated vesicle Golgi-associated vesicle COPI-coated vesicle membrane cytoplasmic vesicle membrane bounding membrane of organelle coated vesicle membrane vesicle membrane Golgi-associated vesicle membrane Golgi membrane endoplasmic reticulum-Golgi intermediate compartment membrane endoplasmic reticulum-Golgi intermediate compartment zymogen granule zymogen granule membrane secretory granule secretory vesicle secretory granule membrane transport vesicle membrane ER to Golgi transport vesicle membrane
D	Transmembrane emp24 domain-containing protein 10	protein binding binding SNARE binding syntaxin binding macromolecule transmembrane transporter activity protein transporter activity transmembrane protein transporter activity transporter activity transmembrane transporter activity	multicellular organismal process regulation of cellular process interleukin-1 production positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production positive regulation of interleukin-1 production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process multicellular organismal process regulation of cellular process interleukin-1 production positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production positive regulation of interleukin-1 production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process regulation of interleukin-1 production biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process amyloid precursor protein catabolic process regulation of amyloid-beta formation regulation of protein metabolic process regulation of amyloid precursor protein catabolic process primary metabolic process regulation of primary metabolic process amyloid-beta metabolic process protein metabolic process amyloid precursor protein metabolic process amyloid-beta formation vesicle budding from membrane cellular localization transport vesicle-mediated transport cellular component organization vesicle organization cellular component biogenesis localization cellular component assembly establishment of localization in cell protein-containing complex assembly cellular component organization or biogenesis membrane organization protein-containing complex organization intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport establishment of localization organelle organization COPII vesicle coat assembly COPII-coated vesicle budding Golgi vesicle transport vesicle coat assembly establishment of protein localization protein transport macromolecule localization intracellular protein localization intracellular protein transport vesicle cargo loading retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum regulation of localization regulation of protein localization positive regulation of establishment of protein localization positive regulation of secretion by cell protein localization to extracellular region positive regulation of protein transport regulation of secretion by cell secretion by cell positive regulation of secretion regulation of transport secretion regulation of establishment of protein localization establishment of protein localization to extracellular region export from cell regulation of protein transport protein secretion positive regulation of protein secretion regulation of protein secretion regulation of secretion positive regulation of transport positive regulation of protein localization regulated exocytosis exocytosis cytosol to ERGIC protein transport COPI-coated vesicle budding Golgi vesicle budding COPI coating of Golgi vesicle Golgi transport vesicle coating protein localization to Golgi apparatus protein localization to organelle protein localization to ERGIC Golgi organization endomembrane system organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus cis-Golgi network organelle intracellular membrane-bounded organelle cytoplasm endomembrane system membrane pigment granule intracellular vesicle melanosome membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus cis-Golgi network organelle intracellular membrane-bounded organelle cytoplasm endomembrane system membrane pigment granule intracellular vesicle melanosome cytoplasmic vesicle vesicle cell periphery plasma membrane COPII-coated ER to Golgi transport vesicle coated vesicle transport vesicle protein-containing complex catalytic complex plasma membrane protein complex membrane protein complex gamma-secretase complex organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane trans-Golgi network transport vesicle clathrin-coated vesicle Golgi-associated vesicle COPI-coated vesicle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane secretory granule secretory vesicle secretory granule membrane Golgi membrane endoplasmic reticulum-Golgi intermediate compartment membrane endoplasmic reticulum-Golgi intermediate compartment zymogen granule zymogen granule membrane transport vesicle membrane coated vesicle membrane ER to Golgi transport vesicle membrane
C	Transmembrane emp24 domain-containing protein 5	-	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport cellular component organization organelle organization cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport cellular component organization organelle organization Golgi ribbon formation cellular component organization or biogenesis Golgi organization endomembrane system organization endoplasmic reticulum to Golgi vesicle-mediated transport Golgi vesicle transport vesicle-mediated transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus cis-Golgi network organelle intracellular membrane-bounded organelle cytoplasm endomembrane system endoplasmic reticulum exit site endoplasmic reticulum membrane bounding membrane of organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus cis-Golgi network organelle intracellular membrane-bounded organelle cytoplasm endomembrane system endoplasmic reticulum exit site endoplasmic reticulum membrane bounding membrane of organelle endoplasmic reticulum-Golgi intermediate compartment membrane endoplasmic reticulum-Golgi intermediate compartment organelle membrane intracellular vesicle COPII-coated ER to Golgi transport vesicle cytoplasmic vesicle coated vesicle vesicle organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane
A	Transmembrane emp24 domain-containing protein 9	protein binding binding SNARE binding syntaxin binding	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport positive regulation of organelle organization regulation of biological process cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport positive regulation of organelle organization regulation of biological process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization biological regulation positive regulation of biological process regulation of organelle organization cellular component organization organelle organization cellular component organization or biogenesis positive regulation of cellular process membrane organization vesicle budding from membrane Golgi vesicle budding vesicle-mediated transport COPI-coated vesicle budding vesicle organization COPI coating of Golgi vesicle Golgi transport vesicle coating Golgi vesicle transport vesicle coat assembly endoplasmic reticulum to Golgi vesicle-mediated transport Golgi organization endomembrane system organization	membrane-bounded organelle intracellular anatomical structure transport vesicle intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle trans-Golgi network transport vesicle cellular anatomical structure cytoplasmic vesicle organelle clathrin-coated vesicle coated vesicle cytoplasm membrane-bounded organelle intracellular anatomical structure transport vesicle intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle trans-Golgi network transport vesicle cellular anatomical structure cytoplasmic vesicle organelle clathrin-coated vesicle coated vesicle cytoplasm Golgi-associated vesicle vesicle Golgi apparatus Golgi membrane membrane bounding membrane of organelle organelle membrane endoplasmic reticulum-Golgi intermediate compartment membrane endoplasmic reticulum-Golgi intermediate compartment extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular membrane-bounded organelle COPII-coated ER to Golgi transport vesicle synapse presynapse synaptic vesicle cell junction secretory vesicle exocytic vesicle endoplasmic reticulum organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR009038	GOLD domain	Domain
B	IPR015720	Transmembrane emp24 domain-containing protein	Family
B	IPR036598	GOLD domain superfamily	Homologous Superfamily
D	IPR009038	GOLD domain	Domain
D	IPR015720	Transmembrane emp24 domain-containing protein	Family
C	IPR009038	GOLD domain	Domain
C	IPR015720	Transmembrane emp24 domain-containing protein	Family
C	IPR036598	GOLD domain superfamily	Homologous Superfamily
A	IPR009038	GOLD domain	Domain
A	IPR015720	Transmembrane emp24 domain-containing protein	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

21GM | pdb_000021gm

The atomic coordinate of p24 complex at pH 7.5

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage