Annotations: 1YXM

Crystal structure of peroxisomal trans 2-enoyl CoA reductase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1yxmd_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	Peroxisomal trans 2-enoyl CoA reductase	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1yxmc_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	Peroxisomal trans 2-enoyl CoA reductase	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1yxmb_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	Peroxisomal trans 2-enoyl CoA reductase	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1yxma1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	Peroxisomal trans 2-enoyl CoA reductase	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	SDR-like	8057199	3000038	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8057199	3000038	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8057199	3000038	SCOP2B (2022-06-29)
A	SCOP2 Family	Short-chain dehydrogenases/reductases, SDR	8057198	4000029	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SDR-like	8057199	3000038	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	NAD_binding_3	e1yxmD1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: NAD_binding_3	ECOD (v295.2)
C	SidC_N	e1yxmC1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: SidC_N	ECOD (v295.2)
B	NAD_binding_3	e1yxmB1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F: NAD_binding_3	ECOD (v295.2)
A	adh_short_C2	e1yxmA1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: adh_short_C2	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF13561	Enoyl-(Acyl carrier protein) reductase (adh_short_C2)	Enoyl-(Acyl carrier protein) reductase	This domain is found in Enoyl-(Acyl carrier protein) reductases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	peroxisomal trans 2-enoyl CoA reductase	protein binding binding signaling receptor binding oxidoreductase activity oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor trans-2-enoyl-CoA reductase (NADPH) activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity	fatty alcohol metabolic process diterpenoid metabolic process phytol metabolic process alcohol metabolic process primary metabolic process fatty acid derivative metabolic process small molecule metabolic process metabolic process cellular process terpenoid metabolic process lipid metabolic process primary alcohol metabolic process isoprenoid metabolic process fatty acid metabolic process fatty alcohol metabolic process diterpenoid metabolic process phytol metabolic process alcohol metabolic process primary metabolic process fatty acid derivative metabolic process small molecule metabolic process metabolic process cellular process terpenoid metabolic process lipid metabolic process primary alcohol metabolic process isoprenoid metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process monocarboxylic acid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle membrane peroxisome microbody membrane bounding membrane of organelle peroxisomal membrane cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle membrane peroxisome microbody membrane bounding membrane of organelle peroxisomal membrane microbody organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR002347	Short-chain dehydrogenase/reductase SDR	Family
A, B, C, D	IPR052388	Peroxisomal trans-2-enoyl-CoA reductase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	: Q9BY49	intellectual disability atopic eczema Mental deficiency pancreatic ductal adenocarcinoma tuberculosis ductal breast carcinoma in situ invasive ductal breast carcinoma ulcerative colitis Hodgkins lymphoma malignant mesothelioma ovarian cancer psoriasis

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.