Annotations: 1Y96

crystal structure of the Gemin6/Gemin7 heterodimer from the human SMN complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Sm-like ribonucleoproteins	8092460	3000419	SCOP2B (2022-06-29)
B	SCOP2 Family	Gemin7-like	8045928	4004769	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Sm-like ribonucleoproteins	8092460	3000419	SCOP2 (2022-06-29)
C	SCOP2 Family	Gemin6-like	8048131	4005976	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Sm-like ribonucleoproteins	8092461	3000419	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Sm-like ribonucleoproteins	8092461	3000419	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Sigma_1_2	e1y96D1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (v294.2)
B	Ribosomal_S15	e1y96B1	A: beta barrels	X: Globin-like	H: Globin-like	T: Globin-like	F: Ribosomal_S15	ECOD (v294.2)
C	Sigma_1_2	e1y96C1	A: beta barrels	X: HTH	H: Nudix	T: winged helix domain	F: Sigma_1_2	ECOD (v294.2)
A	Gemin6	e1y96A1	A: beta barrels	X: Globin-like	H: Globin-like	T: Globin-like	F: Gemin6	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
B	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
C	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)
A	2.30.30.100	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF11095	Gem-associated protein 7 (Gemin7) (Gemin7)	Gem-associated protein 7 (Gemin7)	Gemin7 is a novel component of the survival of motor neuron complex which functions in the assembly of spliceosomal small nuclear ribonucleoproteins. Gemin7 interacts with several Sm proteins of spliceosomal small nuclear ribonucleoproteins, especial ...	Gemin7 is a novel component of the survival of motor neuron complex which functions in the assembly of spliceosomal small nuclear ribonucleoproteins. Gemin7 interacts with several Sm proteins of spliceosomal small nuclear ribonucleoproteins, especially SmE [1].	Domain
A, C	PF06372	Gemin6 Sm-like domain (Gemin6)	Gemin6 Sm-like domain	This entry represents the N-terminal Sm-like domain from mammalian Gemin6 proteins. The exact function of Gemin6 is unknown but it has been found to form part of the Pfam:PF06003 complex. The SMN complex plays a key role in the biogenesis of spliceos ...	This entry represents the N-terminal Sm-like domain from mammalian Gemin6 proteins. The exact function of Gemin6 is unknown but it has been found to form part of the Pfam:PF06003 complex. The SMN complex plays a key role in the biogenesis of spliceosomal small nuclear ribonucleoproteins (snRNPs) and other ribonucleoprotein particles [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Gem-associated protein 7	RNA binding binding nucleic acid binding	RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA processing mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA processing mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome metabolic process cellular process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile macromolecule metabolic process RNA processing ribonucleoprotein complex biogenesis protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis protein-containing complex organization spliceosomal snRNP assembly	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol SMN-Sm protein complex protein-containing complex SMN complex Sm-like protein family complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol SMN-Sm protein complex protein-containing complex SMN complex Sm-like protein family complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle nucleoplasm organelle lumen organelle membraneless organelle nuclear lumen Gemini of Cajal bodies
A, C	Gem-associated protein 6	RNA binding binding nucleic acid binding	ribonucleoprotein complex biogenesis RNA metabolic process mRNA processing protein-RNA complex assembly cellular component organization cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process spliceosomal complex assembly protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis ribonucleoprotein complex biogenesis RNA metabolic process mRNA processing protein-RNA complex assembly cellular component organization cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process spliceosomal complex assembly protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis RNA processing RNA splicing protein-containing complex organization primary metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process biosynthetic process RNA splicing, via transesterification reactions mRNA splicing, via spliceosome cellular process metabolic process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile macromolecule metabolic process spliceosomal snRNP assembly	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol SMN-Sm protein complex protein-containing complex SMN complex Sm-like protein family complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol SMN-Sm protein complex protein-containing complex SMN complex Sm-like protein family complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle nucleoplasm organelle lumen organelle membraneless organelle nuclear lumen Gemini of Cajal bodies

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR020338	SMN complex, gem-associated protein 7	Family
B, D	IPR047575	Sm domain	Domain
B, D	IPR024642	SUZ-C domain	Domain
A, C	IPR047575	Sm domain	Domain
A, C	IPR047574	AD domain	Domain
A, C	IPR009422	Gem-associated protein 6	Family
A, C	IPR046857	Gem-associated protein 6, Sm-like domain	Domain
A, C	IPR046856	Gem-associated protein 6, C-terminal domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D	: Q9H840	osteosarcoma
A, C	: Q8WXD5	acute myeloid leukemia lung cancer tuberculosis breast cancer malignant colon neoplasm glioblastoma subependymal giant cell astrocytoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.